[BioC] package availability for R3.01

E.M. Lodder e.m.lodder at amc.uva.nl
Wed Sep 4 21:39:41 CEST 2013


Hi All,

Just a quick question I just updated my R to 3.01 and wanted to reinstall some of the packages I was using.
Now I do get the following error message:

>     source("http://bioconductor.org/biocLite.R")
>     biocLite("illuminaMousev2BeadID.db")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
Installing package(s) 'illuminaMousev2BeadID.db'
Warning message:
package 'illuminaMousev2BeadID.db' is not available (for R version 3.0.1)
> library("hgu133plus2.db",character.only = TRUE)
Error in library("hgu133plus2.db", character.only = TRUE) :
  there is no package called 'hgu133plus2.db'
> library("illuminaMousev2BeadID.db", character.only = TRUE)
Error in library("illuminaMousev2BeadID.db", character.only = TRUE) :
  there is no package called 'illuminaMousev2BeadID.db'
>

Any ideas on how to fix this? Or should I just operate with two different versions of R in parallel for the moment?

Thanks!

Elisabeth
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