[BioC] package availability for R3.01

[Marc Carlson]

Hi Elisabeth,

That package "illuminaMousev2BeadID.db"  is not a bioconductor package 
and I don't think it ever has been a bioconductor package.  Perhaps 
someone in the past made a custom package for you and then named it 
that?  In any case, you can look at this vignette if you need to repeat 
that process:

http://www.bioconductor.org/packages/release/bioc/vignettes/AnnotationForge/inst/doc/SQLForge.pdf


As for the "hgu133plus2.db" package, you can get that package using 
biocLite() as it is a bioconductor package.  If you want to see a list 
of all the annotation packages for the latest release you can find it here:

http://www.bioconductor.org/packages/release/BiocViews.html#___AnnotationData



   Marc




On 09/04/2013 12:39 PM, E.M. Lodder wrote:
> Hi All,
>
> Just a quick question I just updated my R to 3.01 and wanted to reinstall some of the packages I was using.
> Now I do get the following error message:
>
>>      source("http://bioconductor.org/biocLite.R")
>>      biocLite("illuminaMousev2BeadID.db")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
> Installing package(s) 'illuminaMousev2BeadID.db'
> Warning message:
> package 'illuminaMousev2BeadID.db' is not available (for R version 3.0.1)
>> library("hgu133plus2.db",character.only = TRUE)
> Error in library("hgu133plus2.db", character.only = TRUE) :
>    there is no package called 'hgu133plus2.db'
>> library("illuminaMousev2BeadID.db", character.only = TRUE)
> Error in library("illuminaMousev2BeadID.db", character.only = TRUE) :
>    there is no package called 'illuminaMousev2BeadID.db'
> Any ideas on how to fix this? Or should I just operate with two different versions of R in parallel for the moment?
>
> Thanks!
>
> Elisabeth
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