[BioC] AnnotationForge example does not work

[Marc Carlson]

Thanks for finding this problem!  It shall be fixed.

   Marc


On 11/28/2012 07:38 AM, Nicos Angelopoulos (NKI Amsterdam) wrote:
> Hi James,
>
> Thanks for this.
>
> I can confirm the call to makeDBPackage()
> completes once 'org.Hs.eg.db' has been installed and loaded.
>
> SQLForge.R itself then fails on
> file.rename(file.path(tmpout, "hcg110.db"),file.path(tmpout, "foo.db"))
> but this is just as a matter of general info.
> In my run there was no such file in the tmpout directory.
> The package built correctly and I was able to load it.
>
> Hope the dependency to 'org.Hs.eg.db' becomes explicit both in the
> SQLForge.pdf and the sources.
>
> Many thanks also to the developers and maintainers of these packages.
>
> Regards,
>
> Nicos Angelopoulos
> ---
> http://bioinformatics.nki.nl/~nicos/
>
> On Wed, 28 Nov 2012 13:55:39 +0000
> "James F. Reid"<reidjf at gmail.com>  wrote:
>
>> Hi Nicos,
>>
>> I think installing 'org.Hs.eg.db' will solve the problem. It is a
>> required package when you load your newly created custom annotation package.
>>
>> HTH
>> J.
>>
>>