[BioC] AnnotationForge example does not work

[Nicos Angelopoulos (NKI Amsterdam)]

Hi James,

Thanks for this. 

I can confirm the call to makeDBPackage()
completes once 'org.Hs.eg.db' has been installed and loaded.

SQLForge.R itself then fails on 
file.rename(file.path(tmpout, "hcg110.db"),file.path(tmpout, "foo.db"))
but this is just as a matter of general info.
In my run there was no such file in the tmpout directory.
The package built correctly and I was able to load it.

Hope the dependency to 'org.Hs.eg.db' becomes explicit both in the
SQLForge.pdf and the sources.

Many thanks also to the developers and maintainers of these packages.

Regards,

Nicos Angelopoulos
---
http://bioinformatics.nki.nl/~nicos/

On Wed, 28 Nov 2012 13:55:39 +0000
"James F. Reid" <reidjf at gmail.com> wrote:

> Hi Nicos,
> 
> I think installing 'org.Hs.eg.db' will solve the problem. It is a 
> required package when you load your newly created custom annotation package.
> 
> HTH
> J.
> 
>