[BioC] Problems installing EBImage package

[Wolfgang Huber]

Dear Marco

my first suggestion is to upgrade to a more recent R, i.e. either R 
version 2.14.2 from 2012-02-29, or R 2.15.0 which is scheduled for March 
30, if you can wait a few more days.

Then, to make sure that you build your R from source using the same 
system resources (e.g. C compiler) as you use to build gtk+-2.0 and 
ImageMagick.

Would you mind trying these and then report back whether or not that 
solved your problem?

	best wishes
	Wolfgang	


Mar/27/12 6:14 PM, Marco Sassi [guest] scripsit::
>
> Hello,
> we followed your EBImage installation documentation and tested gtk-demo, convert -version, pkg-config gtk+-2.0 --libs  and  Magick-config --libs (all without error messages)
>
> ImageMagick 6.7.5-1
>
>
> Running R CMD INSTALL EBImage_3.11.2.tar.gz
> we compile everything apart from last step:
>
> ...........
> installing to /opt/local/opkg/lib/r/library/EBImage/libs
> ** R
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
>    converting help for package 'EBImage'
>      finding HTML links ... done
>      EBImage-deprecated                      html
>      EBImage                                 html
>      Image                                   html
>      blur                                    html
>      bwlabel                                 html
>      channel                                 html
>      combine                                 html
>      computeFeatures                         html
>      display                                 html
>      distmap                                 html
>      drawCircle                              html
>      drawable                                html
>      equalize                                html
>      feature-obsolete                        html
>      fillHull                                html
>      filter2                                 html
>      floodFill                               html
>      getFeatures                             html
>      io                                      html
>      morphology                              html
>      normalize                               html
>      ocontour                                html
>      paintObjects                            html
>      propagate                               html
>      rmObjects                               html
>      spatial                                 html
>      stackObjects                            html
>      thresh                                  html
>      tile                                    html
>      translate                               html
>      watershed                               html
> ** building package indices ...
> ** testing if installed package can be loaded
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>    unable to load shared library '/opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so':
>    ld.so.1: R: fatal: relocation error: file /opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so: symbol DispatchImage: referenced symbol not found
> ERROR: loading failed
>
>
> Any idea?
> Thanks
>
> Marco Sassi
> Meteoswiss
>
>
>   -- output of sessionInfo():
>
>
> R version 2.11.1 (2010-05-31)
> sparc-sun-solaris2.10
>
> locale:
> [1] /en_US.ISO8859-1/C/en_US.ISO8859-1/en_US.ISO8859-1/C/en_US.ISO8859-1
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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-- 
Best wishes
	Wolfgang

Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber