[BioC] beadarray package: BASH error

Kemal Akat [guest] guest at bioconductor.org
Tue Mar 27 20:35:24 CEST 2012

Hi all,

When I run the BASH command from the bead array package with my data or the example data from the beadarray package I get the following error (code for the example data):

R> library("beadarray")
R> library("beadarrayExampleData")
R> data(exampleBLData)
R> output <- BASH(exampleBLData,array=1:2,useLocs=FALSE)
Error in BASH(exampleBLData, array = 1:2, useLocs = FALSE) : 
  BASH can be applied to only one array at a time

Does anyone have an idea what is wrong?

Thank you!

 -- output of sessionInfo(): 

R> sessionInfo()
R version 2.15.0 alpha (2012-03-08 r58645)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] beadarrayExampleData_1.0.3 BiocInstaller_1.3.9       
[3] beadarray_2.5.9            ggplot2_0.9.0             
[5] Biobase_2.15.4             BiocGenerics_0.1.14       

loaded via a namespace (and not attached):
 [1] AnnotationDbi_1.17.27 BeadDataPackR_1.7.1   colorspace_1.1-1     
 [4] DBI_0.2-5             dichromat_1.2-4       digest_0.5.1         
 [7] grid_2.15.0           IRanges_1.13.34       limma_3.11.19        
[10] MASS_7.3-17           memoise_0.1           munsell_0.3          
[13] plyr_1.7.1            proto_0.3-9.2         RColorBrewer_1.0-5   
[16] reshape2_1.2.1        RSQLite_0.11.1        scales_0.2.0         
[19] stats4_2.15.0         stringr_0.6           tools_2.15.0         

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