[BioC] Problems installing EBImage package

Marco Sassi [guest] guest at bioconductor.org
Tue Mar 27 18:14:02 CEST 2012

we followed your EBImage installation documentation and tested gtk-demo, convert -version, pkg-config gtk+-2.0 --libs  and  Magick-config --libs (all without error messages)

ImageMagick 6.7.5-1

Running R CMD INSTALL EBImage_3.11.2.tar.gz
we compile everything apart from last step:

installing to /opt/local/opkg/lib/r/library/EBImage/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'EBImage'
    finding HTML links ... done
    EBImage-deprecated                      html
    EBImage                                 html
    Image                                   html
    blur                                    html
    bwlabel                                 html
    channel                                 html
    combine                                 html
    computeFeatures                         html
    display                                 html
    distmap                                 html
    drawCircle                              html
    drawable                                html
    equalize                                html
    feature-obsolete                        html
    fillHull                                html
    filter2                                 html
    floodFill                               html
    getFeatures                             html
    io                                      html
    morphology                              html
    normalize                               html
    ocontour                                html
    paintObjects                            html
    propagate                               html
    rmObjects                               html
    spatial                                 html
    stackObjects                            html
    thresh                                  html
    tile                                    html
    translate                               html
    watershed                               html
** building package indices ...
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared library '/opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so':
  ld.so.1: R: fatal: relocation error: file /opt/local/opkg/lib/r/library/EBImage/libs/EBImage.so: symbol DispatchImage: referenced symbol not found
ERROR: loading failed

Any idea?

Marco Sassi

 -- output of sessionInfo(): 

R version 2.11.1 (2010-05-31)

[1] /en_US.ISO8859-1/C/en_US.ISO8859-1/en_US.ISO8859-1/C/en_US.ISO8859-1

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

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