[BioC] mzR error

[Laurent Gatto]

Dear Gavin,

The issue was the result of compiler/linker error and required a fresh
mzR build, which is not available through biocLite.

Best wishes,

Laurent

On 27 June 2012 10:27, Laurent Gatto <laurent.gatto at gmail.com> wrote:
> On 27 June 2012 10:21, Gavin Blackburn <gavin.blackburn at strath.ac.uk> wrote:
>> Hi Laurent,
>>
>> Thanks very much, I'll check the Rcpp list to see when it is solved and will downgrade it for now.
>
> It is not clear (at least to me) what happens [1]; it might fix itself
> with new Rcpp and mzR binaries. I will post an update here, anyway.
>
> Best wishes,
>
> Laurent
>
> [1] http://lists.r-forge.r-project.org/pipermail/rcpp-devel/2012-June/thread.html#3940
>
>> Cheers,
>>
>> Gavin.
>>
>> -----Original Message-----
>> From: Laurent Gatto [mailto:laurent.gatto at gmail.com]
>> Sent: 26 June 2012 17:38
>> To: Gavin Blackburn [guest]
>> Cc: bioconductor at r-project.org; Gavin Blackburn
>> Subject: Re: [BioC] mzR error
>>
>> On 26 June 2012 17:19, Laurent Gatto <laurent.gatto at gmail.com> wrote:
>>> Dear Gavin,
>>>
>>> I can't reproduce this, but I do not have the same configuration at
>>> hand for the moment - this could be an incompatibility with the latest
>>> Rcpp.
>>
>> Ok, I can now reproduce on a Windows box with mzR 1.2.1 (latest
>> stable) and Rcpp 0.9.12. Downgrading to Rcpp 0.9.10 [1] fixes the issue. I will bring it up on the Rcpp list.
>>
>> Thank you for the report.
>>
>> Laurent
>>
>> [1] http://cran.us.r-project.org/bin/windows/contrib/2.13/Rcpp_0.9.10.zip
>>
>>
>>> What version of mzR have you - packageVersion("mzR")
>>>
>>> Best wishes,
>>>
>>> Laurent
>>>
>>> On 26 June 2012 16:07, Gavin Blackburn [guest] <guest at bioconductor.org> wrote:
>>>>
>>>> We are getting the following error when trying to install and run mzR on a 64-bit Windows 7 machine:
>>>>> library(mzR)
>>>> Loading required package: Rcpp
>>>> Error : .onLoad failed in loadNamespace() for 'mzR', details:
>>>>  call: value[[3L]](cond)
>>>>  error: failed to load module Ramp from package mzR could not find
>>>> function "errorOccured"
>>>> Error: package/namespace load failed for ‘mzR’
>>>>
>>>>
>>>> Do you know what might be causing it?
>>>>
>>>> Cheers,
>>>>
>>>> Gavin.
>>>>
>>>>
>>>>  -- output of sessionInfo():
>>>>
>>>>  sessionInfo()
>>>> R version 2.15.1 (2012-06-22)
>>>> Platform: x86_64-pc-mingw32/x64 (64-bit)
>>>>
>>>> locale:
>>>> [1] LC_COLLATE=English_United Kingdom.1252 [2]
>>>> LC_CTYPE=English_United Kingdom.1252 [3] LC_MONETARY=English_United
>>>> Kingdom.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United Kingdom.1252
>>>>
>>>> attached base packages:
>>>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>>>
>>>> other attached packages:
>>>> [1] Rcpp_0.9.12         BiocInstaller_1.4.7
>>>>
>>>> loaded via a namespace (and not attached):
>>>> [1] Biobase_2.16.0     BiocGenerics_0.2.0 tools_2.15.1
>>>>
>>>> --
>>>> Sent via the guest posting facility at bioconductor.org.
>>>>
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>>>
>>>
>>>
>>> --
>>> [ Laurent Gatto | slashhome.be ]
>>
>>
>>
>> --
>> [ Laurent Gatto | slashhome.be ]
>
>
>
> --
> [ Laurent Gatto | slashhome.be ]



-- 
[ Laurent Gatto | slashhome.be ]