[BioC] mzR error

[Laurent Gatto]

On 27 June 2012 10:21, Gavin Blackburn <gavin.blackburn at strath.ac.uk> wrote:
> Hi Laurent,
>
> Thanks very much, I'll check the Rcpp list to see when it is solved and will downgrade it for now.

It is not clear (at least to me) what happens [1]; it might fix itself
with new Rcpp and mzR binaries. I will post an update here, anyway.

Best wishes,

Laurent

[1] http://lists.r-forge.r-project.org/pipermail/rcpp-devel/2012-June/thread.html#3940

> Cheers,
>
> Gavin.
>
> -----Original Message-----
> From: Laurent Gatto [mailto:laurent.gatto at gmail.com]
> Sent: 26 June 2012 17:38
> To: Gavin Blackburn [guest]
> Cc: bioconductor at r-project.org; Gavin Blackburn
> Subject: Re: [BioC] mzR error
>
> On 26 June 2012 17:19, Laurent Gatto <laurent.gatto at gmail.com> wrote:
>> Dear Gavin,
>>
>> I can't reproduce this, but I do not have the same configuration at
>> hand for the moment - this could be an incompatibility with the latest
>> Rcpp.
>
> Ok, I can now reproduce on a Windows box with mzR 1.2.1 (latest
> stable) and Rcpp 0.9.12. Downgrading to Rcpp 0.9.10 [1] fixes the issue. I will bring it up on the Rcpp list.
>
> Thank you for the report.
>
> Laurent
>
> [1] http://cran.us.r-project.org/bin/windows/contrib/2.13/Rcpp_0.9.10.zip
>
>
>> What version of mzR have you - packageVersion("mzR")
>>
>> Best wishes,
>>
>> Laurent
>>
>> On 26 June 2012 16:07, Gavin Blackburn [guest] <guest at bioconductor.org> wrote:
>>>
>>> We are getting the following error when trying to install and run mzR on a 64-bit Windows 7 machine:
>>>> library(mzR)
>>> Loading required package: Rcpp
>>> Error : .onLoad failed in loadNamespace() for 'mzR', details:
>>>  call: value[[3L]](cond)
>>>  error: failed to load module Ramp from package mzR could not find
>>> function "errorOccured"
>>> Error: package/namespace load failed for ‘mzR’
>>>
>>>
>>> Do you know what might be causing it?
>>>
>>> Cheers,
>>>
>>> Gavin.
>>>
>>>
>>>  -- output of sessionInfo():
>>>
>>>  sessionInfo()
>>> R version 2.15.1 (2012-06-22)
>>> Platform: x86_64-pc-mingw32/x64 (64-bit)
>>>
>>> locale:
>>> [1] LC_COLLATE=English_United Kingdom.1252 [2]
>>> LC_CTYPE=English_United Kingdom.1252 [3] LC_MONETARY=English_United
>>> Kingdom.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United Kingdom.1252
>>>
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>>
>>> other attached packages:
>>> [1] Rcpp_0.9.12         BiocInstaller_1.4.7
>>>
>>> loaded via a namespace (and not attached):
>>> [1] Biobase_2.16.0     BiocGenerics_0.2.0 tools_2.15.1
>>>
>>> --
>>> Sent via the guest posting facility at bioconductor.org.
>>>
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>>
>>
>>
>> --
>> [ Laurent Gatto | slashhome.be ]
>
>
>
> --
> [ Laurent Gatto | slashhome.be ]



-- 
[ Laurent Gatto | slashhome.be ]