[BioC] mzR error

[Laurent Gatto]

On 29 June 2012 19:10, Laurent Gatto <laurent.gatto at gmail.com> wrote:
> Dear Gavin,
>
> The issue was the result of compiler/linker error and required a fresh
> mzR build, which is not available through biocLite.

...which is *now* available through biocLite.

> Best wishes,
>
> Laurent
>
> On 27 June 2012 10:27, Laurent Gatto <laurent.gatto at gmail.com> wrote:
>> On 27 June 2012 10:21, Gavin Blackburn <gavin.blackburn at strath.ac.uk> wrote:
>>> Hi Laurent,
>>>
>>> Thanks very much, I'll check the Rcpp list to see when it is solved and will downgrade it for now.
>>
>> It is not clear (at least to me) what happens [1]; it might fix itself
>> with new Rcpp and mzR binaries. I will post an update here, anyway.
>>
>> Best wishes,
>>
>> Laurent
>>
>> [1] http://lists.r-forge.r-project.org/pipermail/rcpp-devel/2012-June/thread.html#3940
>>
>>> Cheers,
>>>
>>> Gavin.
>>>
>>> -----Original Message-----
>>> From: Laurent Gatto [mailto:laurent.gatto at gmail.com]
>>> Sent: 26 June 2012 17:38
>>> To: Gavin Blackburn [guest]
>>> Cc: bioconductor at r-project.org; Gavin Blackburn
>>> Subject: Re: [BioC] mzR error
>>>
>>> On 26 June 2012 17:19, Laurent Gatto <laurent.gatto at gmail.com> wrote:
>>>> Dear Gavin,
>>>>
>>>> I can't reproduce this, but I do not have the same configuration at
>>>> hand for the moment - this could be an incompatibility with the latest
>>>> Rcpp.
>>>
>>> Ok, I can now reproduce on a Windows box with mzR 1.2.1 (latest
>>> stable) and Rcpp 0.9.12. Downgrading to Rcpp 0.9.10 [1] fixes the issue. I will bring it up on the Rcpp list.
>>>
>>> Thank you for the report.
>>>
>>> Laurent
>>>
>>> [1] http://cran.us.r-project.org/bin/windows/contrib/2.13/Rcpp_0.9.10.zip
>>>
>>>
>>>> What version of mzR have you - packageVersion("mzR")
>>>>
>>>> Best wishes,
>>>>
>>>> Laurent
>>>>
>>>> On 26 June 2012 16:07, Gavin Blackburn [guest] <guest at bioconductor.org> wrote:
>>>>>
>>>>> We are getting the following error when trying to install and run mzR on a 64-bit Windows 7 machine:
>>>>>> library(mzR)
>>>>> Loading required package: Rcpp
>>>>> Error : .onLoad failed in loadNamespace() for 'mzR', details:
>>>>>  call: value[[3L]](cond)
>>>>>  error: failed to load module Ramp from package mzR could not find
>>>>> function "errorOccured"
>>>>> Error: package/namespace load failed for ‘mzR’
>>>>>
>>>>>
>>>>> Do you know what might be causing it?
>>>>>
>>>>> Cheers,
>>>>>
>>>>> Gavin.
>>>>>
>>>>>
>>>>>  -- output of sessionInfo():
>>>>>
>>>>>  sessionInfo()
>>>>> R version 2.15.1 (2012-06-22)
>>>>> Platform: x86_64-pc-mingw32/x64 (64-bit)
>>>>>
>>>>> locale:
>>>>> [1] LC_COLLATE=English_United Kingdom.1252 [2]
>>>>> LC_CTYPE=English_United Kingdom.1252 [3] LC_MONETARY=English_United
>>>>> Kingdom.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United Kingdom.1252
>>>>>
>>>>> attached base packages:
>>>>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>>>>
>>>>> other attached packages:
>>>>> [1] Rcpp_0.9.12         BiocInstaller_1.4.7
>>>>>
>>>>> loaded via a namespace (and not attached):
>>>>> [1] Biobase_2.16.0     BiocGenerics_0.2.0 tools_2.15.1
>>>>>
>>>>> --
>>>>> Sent via the guest posting facility at bioconductor.org.
>>>>>
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>>>>
>>>>
>>>>
>>>> --
>>>> [ Laurent Gatto | slashhome.be ]
>>>
>>>
>>>
>>> --
>>> [ Laurent Gatto | slashhome.be ]
>>
>>
>>
>> --
>> [ Laurent Gatto | slashhome.be ]
>
>
>
> --
> [ Laurent Gatto | slashhome.be ]



-- 
[ Laurent Gatto | slashhome.be ]