[BioC] [Fwd: help in annotation ILLUMINA probes]

[Dave Tang]

On Tue, 17 May 2011 17:12:13 +0900, Mark Dunning <mark.dunning at gmail.com>  
wrote:

> Hi Nathalie,
>
> You can use the illumina Bioconductor annotation packages to do this.
> The particular one you need is illuminaMousev2.db
>
>> library(illuminaMousev2.db)
>
>> ids = c("ILMN_1250814", "ILMN_1257855", "ILMN_2537948", "ILMN_3144164",  
>> "ILMN_2636200")
>
>> mget(ids, illuminaMousev2GENOMICLOCATION)

Dear Mark,

I ran the code but came across some problems. Here's my history

library("AnnotationDbi")
source("http://bioconductor.org/biocLite.R")
biocLite("illuminaMousev2.db")
library(illuminaMousev2.db)
ids = c("ILMN_1250814", "ILMN_1257855", "ILMN_2537948", "ILMN_3144164",  
"ILMN_2636200")
mget(ids, illuminaMousev2GENOMICLOCATION)

Error: object 'illuminaMousev2GENOMICLOCATION' not found
Error in mget(ids, illuminaMousev2GENOMICLOCATION) :
   error in evaluating the argument 'envir' in selecting a method for  
function 'mget'

sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-unknown-linux-gnu

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] illuminaMousev2.db_1.6.1 org.Mm.eg.db_2.4.1       RSQLite_0.9-2
[4] DBI_0.2-5                AnnotationDbi_1.10.1     Biobase_2.8.0

loaded via a namespace (and not attached):
[1] tools_2.11.0

Cheers,


-- 
Dave