[BioC] human exon array 1.0ST, exonmap, exon.pmcdf troubles

[Tobias Straub]

sorry my fault. just realized that i am working on Gene 1.0ST and not  
Exon 1.0ST CEL files.

On Nov 26, 2008, at 7:13 PM, Tobias Straub wrote:

> Hi!
>
> for the first time i am working on the affy human exon array and  
> when using 'exonmap' and the exon.pmcdf i get the following error  
> when calling rma
>
> > x.rma <- rma(raw.data)
> Error in .local(object, ...) : subscript out of bounds
>
> > sessionInfo()
> R version 2.8.0 Patched (2008-11-15 r46953)
> i386-apple-darwin9.5.0
>
> locale:
> en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] splines   tools     stats     graphics  grDevices utils      
> datasets  methods   base
>
> other attached packages:
> [1] exon.pmcdf_1.1     exonmap_2.0.0      RMySQL_0.6-1       DBI_0.2-4
> [5] RColorBrewer_1.0-2 genefilter_1.22.0  survival_2.34-1     
> affy_1.20.0
> [9] Biobase_2.2.1
>
> loaded via a namespace (and not attached):
> [1] AnnotationDbi_1.4.2  RSQLite_0.7-1        affyio_1.10.1         
> annotate_1.20.1
> [5] preprocessCore_1.4.0
>
> any suggestions anyone?
> thanks in advance
> Tobias
> ----------------------------------------------------------------------
> Tobias Straub   ++4989218075439   Adolf-Butenandt-Institute, München D
>
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----------------------------------------------------------------------
Tobias Straub   ++4989218075439   Adolf-Butenandt-Institute, München D