[BioC] human exon array 1.0ST, exonmap, exon.pmcdf troubles
Tobias Straub
tstraub at med.uni-muenchen.de
Wed Nov 26 19:13:09 CET 2008
Hi!
for the first time i am working on the affy human exon array and when
using 'exonmap' and the exon.pmcdf i get the following error when
calling rma
> x.rma <- rma(raw.data)
Error in .local(object, ...) : subscript out of bounds
> sessionInfo()
R version 2.8.0 Patched (2008-11-15 r46953)
i386-apple-darwin9.5.0
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines tools stats graphics grDevices utils
datasets methods base
other attached packages:
[1] exon.pmcdf_1.1 exonmap_2.0.0 RMySQL_0.6-1 DBI_0.2-4
[5] RColorBrewer_1.0-2 genefilter_1.22.0 survival_2.34-1 affy_1.20.0
[9] Biobase_2.2.1
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.4.2 RSQLite_0.7-1 affyio_1.10.1
annotate_1.20.1
[5] preprocessCore_1.4.0
any suggestions anyone?
thanks in advance
Tobias
----------------------------------------------------------------------
Tobias Straub ++4989218075439 Adolf-Butenandt-Institute, München D
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