[BioC] illumina: how to retrieve annotation information out of tif-files?
Christian Kohler
Christian.Kohler at klinik.uni-regensburg.de
Thu Mar 6 14:42:16 CET 2008
Dear list,
I recently started dealing with illumina-data, therefor I am currently
working through the example datasets provided by the 'beadarray' vignette.
Here, information on the annotation of the chip used is stored in
'Human_WG-6.csv' (considering the 'BeadLevelExample' data).
When dealing with Affymetrix *.CEL.[gz] files, it is possible to
directly extract chip information via 'gzip -dc foo.CEL.gz | grep
DatHeader'.
which yields stl
'DatHeader=[38..46177] . . . .. HG_U95Av2.1sq
'
I am now wondering if such kind of information can also be extracted out
of illumina tif-files (if for whatever reason the annotation file is nor
available).
Thanks for any help.
Cheers
/Christian/
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