[BioC] GOstats locked database

Herve Pages hpages at fhcrc.org
Mon Jan 28 20:47:15 CET 2008

Hi Janet,

Janet Young wrote:
>> Janet Young <jayoung at ...> writes:
>>> Error in sqliteFetch(rs, n = -1, ...) :
>>>    RSQLite driver: (RS_SQLite_fetch: failed first step: database is  
>>> locked)
>>> Calls: get ... dbGetQuery -> sqliteQuickSQL -> sqliteFetch -> .Call
>>> Execution halted
>> Another update: our systems admin people this morning reported file server
>> problems (should now be fixed).  I strongly suspect that's what was causing my
>> error with hyperGTest, etc. I'm re-running now and will confirm whether the
>> problem has gone ASAP.
> Last message on this subject, I promise - I kept on trying the script, and
> finally got it to run all the way through without errors. So I don't think there
> is a problem with GOstats - I'm pretty sure the problem was due to our flaky
> file server (which is apparently fixed now).
> sorry to have bothered you all,

Thanks for reporting this with so many details! It is very useful for us
to get this kind of feedback; there is always something to learn about it.
I'm glad that you finally found the cause of the problem and fixed it.


> Janet
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