[BioC] GOstats locked database

Janet Young jayoung at fhcrc.org
Sat Jan 26 23:19:50 CET 2008

> Janet Young <jayoung at ...> writes:
> > Error in sqliteFetch(rs, n = -1, ...) :
> >    RSQLite driver: (RS_SQLite_fetch: failed first step: database is  
> > locked)
> > Calls: get ... dbGetQuery -> sqliteQuickSQL -> sqliteFetch -> .Call
> > Execution halted
> Another update: our systems admin people this morning reported file server
> problems (should now be fixed).  I strongly suspect that's what was causing my
> error with hyperGTest, etc. I'm re-running now and will confirm whether the
> problem has gone ASAP.

Last message on this subject, I promise - I kept on trying the script, and
finally got it to run all the way through without errors. So I don't think there
is a problem with GOstats - I'm pretty sure the problem was due to our flaky
file server (which is apparently fixed now).

sorry to have bothered you all,


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