[BioC] Rat Nimblegen promoter dataset HOWTO

James W. MacDonald jmacdon at med.umich.edu
Thu Jan 17 17:07:41 CET 2008

Hi Dario,

Take a look at ACME and/or Ringo.



Dario Greco wrote:
> Dear List,
> I am going to analyze a set of Rattus Norvegicus Nimblegen promoter arrays.
> briefly, i have 6 slides. in each slide, the ChIP (of a Histon) and the 
> input chromatin have been hybridized.
> of these 6 slides, 3 are from control animals, and 3 from animals 
> treated with a specific drug.
> i am interested in finding promoters differently enriched in treated vs 
> control animals.
> i have not very clear ideas about the steps/BioC-tools of this kind of 
> analysis, so any help is very welcome.
> thank you very much,
> yours
> d

James W. MacDonald, M.S.
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109

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