[BioC] Rat Nimblegen promoter dataset HOWTO
James W. MacDonald
jmacdon at med.umich.edu
Thu Jan 17 17:07:41 CET 2008
Take a look at ACME and/or Ringo.
Dario Greco wrote:
> Dear List,
> I am going to analyze a set of Rattus Norvegicus Nimblegen promoter arrays.
> briefly, i have 6 slides. in each slide, the ChIP (of a Histon) and the
> input chromatin have been hybridized.
> of these 6 slides, 3 are from control animals, and 3 from animals
> treated with a specific drug.
> i am interested in finding promoters differently enriched in treated vs
> control animals.
> i have not very clear ideas about the steps/BioC-tools of this kind of
> analysis, so any help is very welcome.
> thank you very much,
James W. MacDonald, M.S.
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
Ann Arbor MI 48109
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