[BioC] Rat Nimblegen promoter dataset HOWTO
dario.greco at helsinki.fi
Thu Jan 17 16:59:07 CET 2008
I am going to analyze a set of Rattus Norvegicus Nimblegen promoter arrays.
briefly, i have 6 slides. in each slide, the ChIP (of a Histon) and the
input chromatin have been hybridized.
of these 6 slides, 3 are from control animals, and 3 from animals
treated with a specific drug.
i am interested in finding promoters differently enriched in treated vs
i have not very clear ideas about the steps/BioC-tools of this kind of
analysis, so any help is very welcome.
thank you very much,
MSc, PhD student
Institute of Biotechnology - University of Helsinki
Building Cultivator II, room 223b
P.O.Box 56 Viikinkaari 4
Office: +358 9 191 58951
Fax: +358 9 191 58952
Mobile: +358 44 023 5780
email: dario.greco at helsinki.fi
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