[BioC] Rat Nimblegen promoter dataset HOWTO

[Dario Greco]

Dear List,

I am going to analyze a set of Rattus Norvegicus Nimblegen promoter arrays.
briefly, i have 6 slides. in each slide, the ChIP (of a Histon) and the 
input chromatin have been hybridized.
of these 6 slides, 3 are from control animals, and 3 from animals 
treated with a specific drug.

i am interested in finding promoters differently enriched in treated vs 
control animals.

i have not very clear ideas about the steps/BioC-tools of this kind of 
analysis, so any help is very welcome.

thank you very much,
yours
d

-- 
Dario Greco
MSc, PhD student
Institute of Biotechnology - University of Helsinki
Building Cultivator II, room 223b
P.O.Box 56    Viikinkaari 4
FIN-00014    Finland
Office: +358 9 191 58951
Fax: +358 9 191 58952
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email: dario.greco at helsinki.fi