[BioC] GeneticsBase readGenes not reading

Wolfgang Huber huber at ebi.ac.uk
Tue Feb 12 11:35:06 CET 2008


Farrel Buchinsky wrote:
> Any idea why I get this message
> 
> b <-readGenes("pedformat.txt",gformat="ped")
> Error in FUN(X[[2L]], ...) : cannot coerce to vector
> 
> Where pedformat.txt was diretly copied from
> http://www.sph.umich.edu/csg/abecasis/GOLD/docs/pedigree.html
> 100 1 0 0 1  1 2  1 2  1 2
> 100 2 0 0 2  1 2  1 2  1 2
> 100 3 1 2 1  1 1  2 2  1 1
> 
> 
Dear Farrel,

thank you for your feedback. Can you please include the output of
"sessionInfo()" to show versions of R and all attached packages?

Best wishes
 Wolfgang

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Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber



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