[BioC] from gene name to locuslink id
Sean Davis
sdavis2 at mail.nih.gov
Tue Jun 19 03:09:17 CEST 2007
Weiwei Shi wrote:
> Hi,
>
> suppose I have a list of gene names like below, is there a
> "fuzzy"-matching based algorithm to convert gene name to locuslink
> id's?
>
>
>> head(anno[,4])
>>
> [1] Comp Rheb Ctsj Fgf18 Homer1 Ggtla1
>
Weiwei,
You can grep on the Synonyms and Symbol columns from gene_info file
located here:
ftp://ftp.ncbi.nih.gov/gene/DATA/
Read the README file for more details.
Sean
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