[BioC] ABPackageBuilder not building GO package?

Eric J. Kort eric.kort at exsilico.biz
Sat Jul 22 01:37:56 CEST 2006

Hi Nianhua.  

No...the syntax you suggested resulted in the same set of annotation objects being built, with no GO annotation.

Any other thoughts?


>From: Nianhua Li [mailto:nli at fhcrc.org]
>Sent: Friday, July 21, 2006 12:09 PM
>To: bioconductor at stat.math.ethz.ch
>Subject: Re: [BioC] ABPackageBuilder not building GO package?
>Hi, Eric,
>The "error" messages about KEGG urls are not really errors, so you can ignore
>them. And the information about removing datasets are normal messages as well.
>Could you please try:
>ABPkgBuilder(baseName="keyp.txt", baseMapType="gb", pkgName="vaimm06",
>pkgPath="./", organism="Mus musculus", version="0.1", author=list(author="Eric
>J. Kort", maintainer="Eric J. Kort"))
>It is the same as your code except that "srcUrls" is removed. Let me know if it
>doesn't work
>Nianhua Li
>Computational Biology, PHS, FHCRC
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
>Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

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