[BioC] tiling/SNP microarrays

[Sean Davis]

Jeffrey Blanchard wrote:
> Hello,
> 
> I am looking for methods related to tiling arrays that have been  
> implemented in R/Bioconductor.     My use case is a bit different  
> from most tiling arrays and may be more related to SNP discovery.  We  
> are going to use an array design similar to Gresham et al. 2006.  
> Science and Cheng et al. 2005. Science in which the 25mer probes will  
> be offset five bases giving 5x genome coverage.    I have run across  
> the tilingarray package by Wolfgang Huber and Joern Toedling, but  
> before I dive in I wanted to know if anything else is in use or  
> development.

You might want to look at the oligo package, as well.

Sean