[BioC] tiling/SNP microarrays
sdavis2 at mail.nih.gov
Sat Jul 15 04:52:15 CEST 2006
Jeffrey Blanchard wrote:
> I am looking for methods related to tiling arrays that have been
> implemented in R/Bioconductor. My use case is a bit different
> from most tiling arrays and may be more related to SNP discovery. We
> are going to use an array design similar to Gresham et al. 2006.
> Science and Cheng et al. 2005. Science in which the 25mer probes will
> be offset five bases giving 5x genome coverage. I have run across
> the tilingarray package by Wolfgang Huber and Joern Toedling, but
> before I dive in I wanted to know if anything else is in use or
You might want to look at the oligo package, as well.
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