[BioC] tiling/SNP microarrays

Jeffrey Blanchard blanchard at microbio.umass.edu
Sat Jul 15 04:10:29 CEST 2006


I am looking for methods related to tiling arrays that have been  
implemented in R/Bioconductor.     My use case is a bit different  
from most tiling arrays and may be more related to SNP discovery.  We  
are going to use an array design similar to Gresham et al. 2006.  
Science and Cheng et al. 2005. Science in which the 25mer probes will  
be offset five bases giving 5x genome coverage.    I have run across  
the tilingarray package by Wolfgang Huber and Joern Toedling, but  
before I dive in I wanted to know if anything else is in use or  

Thanks, Jeff

Jeffrey L. Blanchard
Assistant Professor
Department of Microbiology
Morrill Science Center
University of Massachusetts
Amherst, MA 01003
Office and Lab:  Morrill I N330
Tel: 413-577-2130
Fax: 545-1578

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