[BioC] Repository for Bioconductor annotation packages

[James W. MacDonald]

Hi Daniel,

Daniel Gatti wrote:
> O/S: Linux
> arch : i686
> R version : 2.2.1
> 
> I'm using the install.packages() command to install Bioconductor 
> libraries to my home directory.  I can install functional packages like 
> "safe" and "GOstats". But when I try to install annotation packages, it 
> tells me that it can't find them in given repository.  I'm using 
> repos="http://www.bioconductor.org".  What repository should I use for 
> the annotation packages?
> 
> install.packages("hgu133a", lib = "~/Rlib", 
> repos="http://www.bioconductor.org")

It's easier to use biocLite() instead.

source("http://www.bioconductor.org/biocLite.R")
biocLite("hgu133a")

HTH,

Jim


> 
> Warning in download.packages(pkgs, destdir = tmpd, available = 
> available,  :
>           no package 'hgu133a' at the repositories
> 
> Dan Gatti
> UNC-CH
> 
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-- 
James W. MacDonald
University of Michigan
Affymetrix and cDNA Microarray Core
1500 E Medical Center Drive
Ann Arbor MI 48109
734-647-5623



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