[BioC] affycoretools limma2annaffy fold change output question

[Kimpel, Mark William]

In the package affycoretools, how does the function limma2annaffy
determine which fold change to output in the case of multiple contrasts?
In topTable, one can specify the coefficient, but I don't see that this
is the case with limma2annaffy.


Thanks,

Mark W Kimpel
Indiana University School of Medicine