[BioC] pm() mm() functionality changed?

Dmitry dgrigor1 at jhmi.edu
Thu Apr 6 19:14:04 CEST 2006


Hi ALL,

What happened to pm() and mm() functions?
I'm running my old scripts:
 
PM<-pm(Data)
MM<-mm(Data)
Cb<-cbind(PM,MM)

And my Cb output looks like this:

1       378     52
2       930     486
3       1424    463
4       93      47
5       248     83
6       314     122

But I need my old way with probe pair ids instead of indices:

1007_s_at1	649	371
1007_s_at2	952	1043
1007_s_at3	1640	2892
1007_s_at4	3505	4894
1007_s_at5	3703	2188
1007_s_at6	2822	1812

I tried:
 
GN<-probeNames(Data)
PM<-pm(Data)
MM<-mm(Data)
Cb<-cbind(GN,PM,MM)

But the Cb output doesn't identify probe pare numbers

1007_s_at	649	371
1007_s_at	952	1043
1007_s_at	1640	2892
1007_s_at	3505	4894
1007_s_at	3703	2188
1007_s_at	2822	1812

Of cause I could script for those identifiers but is there a simple way to
reproduce my old output with this altered pm() and mm()?


Thank you

Dmitry



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