[BioC] pm() mm() functionality changed?
Dmitry
dgrigor1 at jhmi.edu
Thu Apr 6 19:14:04 CEST 2006
Hi ALL,
What happened to pm() and mm() functions?
I'm running my old scripts:
PM<-pm(Data)
MM<-mm(Data)
Cb<-cbind(PM,MM)
And my Cb output looks like this:
1 378 52
2 930 486
3 1424 463
4 93 47
5 248 83
6 314 122
But I need my old way with probe pair ids instead of indices:
1007_s_at1 649 371
1007_s_at2 952 1043
1007_s_at3 1640 2892
1007_s_at4 3505 4894
1007_s_at5 3703 2188
1007_s_at6 2822 1812
I tried:
GN<-probeNames(Data)
PM<-pm(Data)
MM<-mm(Data)
Cb<-cbind(GN,PM,MM)
But the Cb output doesn't identify probe pare numbers
1007_s_at 649 371
1007_s_at 952 1043
1007_s_at 1640 2892
1007_s_at 3505 4894
1007_s_at 3703 2188
1007_s_at 2822 1812
Of cause I could script for those identifiers but is there a simple way to
reproduce my old output with this altered pm() and mm()?
Thank you
Dmitry
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