[BioC] rma and gcrma do not work in R 1.9.0

[Ben Bolstad]

Could you please try updating your packages. The current version of the
affy package is 1.4.29 and other packages may also be out of date.

Thanks,

Ben





On Fri, 2004-05-14 at 06:57, Li, James [PRDUS Non-J&J] wrote:
> I run R 1.9.0 on windows 2000, and have the following libraries installed:
> 
> affydata_1.3.1
> affy_1.4.23
> Biobase_1.4.10
> DynDoc_1.3.14
> gcrma_1.0.6
> hgu133acdf_1.4.3
> hgu95av2cdf_1.4.3
> hgu95av2probe_1.0
> matchprobes_1.0.7
> moe430acdf_1.4.3
> multcomp_0.4-6
> mvtnorm_0.6-6
> rae230acdf_1.4.3
> reposTools_1.3.29
> rgu34acdf_1.4.3
> tkWidgets_1.5.1
> widgetTools_1.2.7
> 
> 1. The rma function (in affy library) always crashes.
> 2. When executing the sample code in gcrma function's document, the
> following error occures:
> 	Loading required package: matchprobes 
> 	Error in f(libname, pkgname) : couldn't find function
> "addVigs2WinMenu"
> 
> Does any one known any quick fix or workaround?
> 
> James
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
Ben Bolstad <bolstad at stat.berkeley.edu>
http://www.stat.berkeley.edu/~bolstad