[BioC] Is rma in affylmGUI different to affy rma?

[Simon Kidd]

At 5:22pm -0400 13/5/04, Simon Kidd wrote:
>Hi,
>
>We have exported the rma values of our genes from affylmGUI and 
>compared them to those from running rma in affy  (eset <- rma(Data) 
>)and they appear to be slightly different. Do the two programs do 
>the same thing?

I think I know why, there were CEL files in the directory which were 
not in the contrasts file.

sorry

Simon