[BioC] Is rma in affylmGUI different to affy rma?

Simon Kidd kidd at mail.rockefeller.edu
Thu May 13 23:52:00 CEST 2004

At 5:22pm -0400 13/5/04, Simon Kidd wrote:
>We have exported the rma values of our genes from affylmGUI and 
>compared them to those from running rma in affy  (eset <- rma(Data) 
>)and they appear to be slightly different. Do the two programs do 
>the same thing?

I think I know why, there were CEL files in the directory which were 
not in the contrasts file.



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