[BioC] (no subject)

[Robert Gentleman]

On Dec 14, 2004, at 11:43 AM, Liviu M Vladutu wrote:

>
>
> I tried to install Rgraphviz using your instructions:
> https://stat.ethz.ch/pipermail/bioconductor/2004-October/006227.html
>
> but I keep receiving this error message:
> * Installing *source* package 'Rgraphviz' ...
> checking for graphviz... checking for dotneato-config...  
> /usr/bin/dotneato-config
> /usr/bin/dotneato-config
> failed
>

Hi,
   Can you check to be sure that dotneato-config is in your path,
Something like:
tui:$dotneato-config --cflags
-I/usr/local/include/graphviz
tui:$dotneato-config --libs
-L/usr/local/lib/graphviz -ldotneato

Check to make sure that these values are correct (the first should be  
the location of the include files and the second the location of the  
libraries). If not, then you need to fix that. If that is ok can you  
please report the version of graphviz you are using.

  Robert


> configure: error: please specify a valid path to 'dotneato-config'  
> version >=
> 1.12 using --with-graphviz=DIR
> ERROR: configuration failed for package 'Rgraphviz'
>
>
> Before I installed graphviz (from sources) -everything OK, I checked
> $ whereis graphviz (it's OK in /usr/lib/graphviz)
> and I checked also the content of  'dotneato-config' in /usr/bin for  
> the line of
> graphviz path and seems to be correct.
> Any suggestions please ?
> Liviu
>
> _______________________________________________
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> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
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| Robert Gentleman              phone: (206) 667-7700            |
| Head, Program in Computational Biology   fax:                          
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| Fred Hutchinson Cancer Research Center   email: rgentlem at fhcrc.org     
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