[BioC] (no subject)

[Saurin D. Jani]

Hi Liviu,

I think I had same problem in past and I solved like this:

install graphviz package from :
http://www.research.att.com/sw/tools/graphviz/download.html

go to your linux/unix shell and type :
whereis graphviz: it will show something like this:
/user/lib/graphviz

whatever paht you get...just type

export LD_LIBRARY_PATH=/usr/lib/graphviz

and from that same shell...try to install Rgraphviz..with:

./configure --prefix=/usr --exec-prefix=/usr
make
make check all
su (change user to super user if you have or just type make install)
make install


If you still have any problems , let me know..! 

Saurin




Quoting Liviu M Vladutu <vladutu at musc.edu>:

> 
> 
> I tried to install Rgraphviz using your instructions:
> https://stat.ethz.ch/pipermail/bioconductor/2004-October/006227.html
> 
> but I keep receiving this error message:
> * Installing *source* package 'Rgraphviz' ...
> checking for graphviz... checking for dotneato-config...
> /usr/bin/dotneato-config
> /usr/bin/dotneato-config
> failed
> configure: error: please specify a valid path to 'dotneato-config' version
> >=
> 1.12 using --with-graphviz=DIR
> ERROR: configuration failed for package 'Rgraphviz'
> 
> 
> Before I installed graphviz (from sources) -everything OK, I checked
> $ whereis graphviz (it's OK in /usr/lib/graphviz)
> and I checked also the content of  'dotneato-config' in /usr/bin for the line
> of
> graphviz path and seems to be correct.
> Any suggestions please ?
> Liviu
> 
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> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> 
-- 
|------------------------------------------------
| Saurin Jani
| Bioinformatician
|
| Department of Cell Biology and Anatomy
| Medical  University of South Carolina (MUSC)
| 173 Ashley Ave
| Charleston,SC - 29407 (US)
| 
| Email: jani at musc.edu
| Phone: (843)792-5483
|------------------------------------------------