[BioC] Hist in affy

[Rafael A. Irizarry]

this is a bug. 

the line
 matplot(all.x, all.y, ylab=ylab, xlab=xlab, ...)
should be
 matplot(all.x, all.y, ylab=ylab, xlab=xlab, type=type, ...)

in the function plotDensity.

thanks for the report.


On Wed, 11 Jun 2003, James MacDonald wrote:

> Using the Win version of R 1.7.0 and Affy 1.2.14, I was able to modify
> the hist function to plot lines rather than numbers using a command like
> this
> 
> hist(abatch, type="l", lty=1, lwd=2)
> 
> Now with R 1.7.1beta and Affy 1.2.27, this doesn't replace the numbers
> with lines. I can sort of emulate the lines by cranking the number size
> down with cex=0.1, but I really prefer the lines for making clear
> plots.
> 
> So, is this due to a change in Affy, or is this an R 1.7.1beta thing?
> If it is affy, is it still possible to draw lines rather than the
> numbers?
> 
> TIA,
> 
> Jim
> 
> 
> 
> James W. MacDonald
> UMCCC Microarray Core Facility
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
> 
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