June 2011 Archives by thread

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Starting: Wed Jun 1 00:42:38 CEST 2011
Ending: Thu Jun 30 21:34:18 CEST 2011
Messages: 61

• [Bioc-sig-seq] rtracklayer BUG!? import.bed pastes/prefixes 'chr' during import of SOME records   Michael Lawrence
  • [Bioc-sig-seq] rtracklayer BUG!? import.bed pastes/prefixes 'chr' during import of SOME records   Cook, Malcolm
    • [Bioc-sig-seq] rtracklayer BUG!? import.bed pastes/prefixes 'chr' during import of SOME records   Michael Lawrence
      • [Bioc-sig-seq] rtracklayer BUG!? import.bed pastes/prefixes 'chr' during import of SOME records   Cook, Malcolm
      • [Bioc-sig-seq] rtracklayer BUG!? import.bed pastes/prefixes 'chr' during import of SOME records   Michael Lawrence
• [Bioc-sig-seq] re-ordering the sequence from ShortRead   Kunbin Qu
  • [Bioc-sig-seq] re-ordering the sequence from ShortRead   Martin Morgan
• [Bioc-sig-seq] transforming bam for TEQC   Martin Morgan
  • [Bioc-sig-seq] transforming bam for TEQC   David A.
    • [Bioc-sig-seq] transforming bam for TEQC   Martin Morgan
• [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Ivan Gregoretti
  • [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Martin Morgan
  • [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Martin Morgan
  • [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Michael Lawrence
    • [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Shah, Nirav
      • [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Martin Morgan
    • [Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts   Ivan Gregoretti
• [Bioc-sig-seq] EdgeR Questions regarding prior.n tagwise dispersion   Davis McCarthy
• [Bioc-sig-seq] BSgenome<-seqinfo undefined woes   Cook, Malcolm
• [Bioc-sig-seq] Questions on doing EdgeR Analysis of Timeseries Data   Lawson, Mark (mjl3p)
  • [Bioc-sig-seq] Questions on doing EdgeR Analysis of Timeseries Data   Lawson, Mark (mjl3p)
• [Bioc-sig-seq] graph package conflict with rtracklayer   Cook, Malcolm
  • [Bioc-sig-seq] graph package conflict with rtracklayer   Michael Lawrence
• [Bioc-sig-seq] roast/romer for count data (edgeR)?   Cei Abreu-Goodger
  • [Bioc-sig-seq] roast/romer for count data (edgeR)?   Gordon K Smyth
    • [Bioc-sig-seq] roast/romer for count data (edgeR)?   Cei Abreu-Goodger
    • [Bioc-sig-seq] roast/romer for count data (edgeR)?   Gordon K Smyth
• [Bioc-sig-seq] "identical" on PhredQuality objects - I'm confused   Janet Young
  • [Bioc-sig-seq] Fwd: "identical" on PhredQuality objects - I'm confused   Janet Young
    • [Bioc-sig-seq] Fwd: "identical" on PhredQuality objects - I'm confused   Marcus Davy
  • [Bioc-sig-seq] "identical" on PhredQuality objects - I'm confused   Hervé Pagès
    • [Bioc-sig-seq] "identical" on PhredQuality objects - I'm confused   Janet Young
• [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Janet Young
  • [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Michael Lawrence
    • [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Janet Young
      • [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Hervé Pagès
      • [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Michael Lawrence
      • [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Hervé Pagès
      • [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values   Michael Lawrence
• [Bioc-sig-seq] Cannot use Views on a DNAString object on R 2.14.0devel   Leonardo Collado Torres
  • [Bioc-sig-seq] Cannot use Views on a DNAString object on R 2.14.0devel   Leonardo Collado Torres
• [Bioc-sig-seq] EdgeR   yifang tan
• [Bioc-sig-seq] edgeR common library size question.   yifang tan
  • [Bioc-sig-seq] edgeR common library size question.   Davis McCarthy
    • [Bioc-sig-seq] edgeR common library size question.   yifang tan
      • [Bioc-sig-seq] edgeR common library size question.   Davis McCarthy
• [Bioc-sig-seq] seqselect using GRanges object on multiple chromosomes   Janet Young
  • [Bioc-sig-seq] Fwd: seqselect using GRanges object on multiple chromosomes   Janet Young
    • [Bioc-sig-seq] Fwd: seqselect using GRanges object on multiple chromosomes   Michael Lawrence
      • [Bioc-sig-seq] Fwd: seqselect using GRanges object on multiple chromosomes   Janet Young
      • [Bioc-sig-seq] Fwd: seqselect using GRanges object on multiple chromosomes   Martin Morgan
      • [Bioc-sig-seq] Fwd: seqselect using GRanges object on multiple chromosomes   Janet Young
• [Bioc-sig-seq] FW: edgeR common library size question.   yifang tan
• [Bioc-sig-seq] Correction: EdgeR common libary size and normalized counts.   yifang tan
• [Bioc-sig-seq] questions about GenomicFeatures   Kunbin Qu
  • [Bioc-sig-seq] questions about GenomicFeatures   Dario Strbenac
  • [Bioc-sig-seq] questions about GenomicFeatures   Martin Morgan
• [Bioc-sig-seq] counting reads for refseq genes   Kunbin Qu
  • [Bioc-sig-seq] counting reads for refseq genes   Abhishek Pratap
• [Bioc-sig-seq] Adjusted p values in edgeR   Sara Hanson
  • [Bioc-sig-seq] Adjusted p values in edgeR   Garg, Kavita

Last message date: Thu Jun 30 21:34:18 CEST 2011
Archived on: Thu Jun 30 21:34:34 CEST 2011

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