[Bioc-devel] Devel build report errors

[Vincent Carey]

Sorry to hear you are having problems.  I tried to run the igblast example
in a current installation.  I set

BASILISK_MINICONDA_VERSION=py311_23.11.0-2

to get faster mamba resolution (but this setting cannot be used on windows
AFAIK, so is not
used in build system) and I hit

warning  libmamba Problem type not implemented
SOLVER_RULE_STRICT_REPO_PRIORITY
failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package dnaio-1.2.1-py310h7c593f9_0 requires xopen >=1.4.0, but none of
the providers can be installed

Could not solve for environment specs
The following package could not be installed
└─ dnaio 1.2.1**  is not installable because it requires
   └─ xopen >=1.4.0 , which conflicts with any installable versions
previously reported.

Now I don't claim this to be representative of the build system but it does
illustrate an issue you
will have to deal with.  It is valuable to use the python session-info
(pypi) to determine the active
versions of all dependencies after a successful run of igblast in your
package.  Then pin them all
in your basilisk.R

As for abandoning the windows platform, it can be done but you lose access
to a large potential user
base.

On Mon, Jul 8, 2024 at 4:14 AM Rodrigo Arcoverde Cerveira <
rodrigo.arcoverdi using gmail.com> wrote:

> Hi all,
>
> We are trying to implement a new tool in scifer package, and I have a few
> questions about compatibility and build reports.
>
>   1.  I am getting the following error in build for Linux (openEuler 22.03
> LTS-SP1) / aarch64.
>
> ```
>
> error: dependency ‘sangerseqR’ is not available for package ‘scifer’
>
> ```
>
> However, when I check the devel build report for sangerseqR it seems to be
> passing without errors and only its dependent packages are getting this
> error.
>
>   1.  Besides that, we are having the same error in Windows and macOS
> 13.6.5 Ventura. This new function we are trying to implement relies on a
> conda environment (basilisk). The issue is that the packages we need in
> conda are not available for all the platforms so I get an error that the
> packages we need are not found.
>
> ```
>
> PackagesNotFoundError: The following packages are not available from
> current channels:
>
>
>
>   - dnaio=1.2.1
>
>   - igblast=1.22.0
>
> ```
>
>   1.  Finally, is it mandatory to be compatible with windows?
>
> Hope someone can help 😃
>
> Best regards,
> Rodrigo
>
>         [[alternative HTML version deleted]]
>
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