[Bioc-devel] Check time on macOS (MIRit)

[Jacopo Ronchi]

Ok, understood. Thanks

Il mer 7 feb 2024, 12:46 Vincent Carey <stvjc using channing.harvard.edu> ha
scritto:

> We need a bit of internal discussion before committing to this notion.  I
> will get back to the list on this.
>
> On Wed, Feb 7, 2024 at 6:34 AM Jacopo Ronchi <jacopo.ronchi using unimib.it>
> wrote:
>
>> Dear Vincent, thanks for your answer. So, at least for now, can I ignore
>> the warning on macOS for the submission of MIRit?
>>
>> Il mer 7 feb 2024, 12:26 Vincent Carey <stvjc using channing.harvard.edu> ha
>> scritto:
>>
>>> Thanks Jacopo.  You shouldn't have to struggle.  We are aware of
>>> disparities of platform
>>> performance and are working to improve the build process.  It will take
>>> time.  I believe that
>>> achievement of acceptable timings on the linux platform should be the
>>> key goal at
>>> this time.
>>>
>>> On Wed, Feb 7, 2024 at 5:18 AM Jacopo Ronchi <jacopo.ronchi using unimib.it>
>>> wrote:
>>>
>>>> Dear developers,
>>>>
>>>> I am struggling to reduce R CMD check times for my package, MIRit, on
>>>> macOS. The check on linux takes 4 minutes, while on macOS it needs 9/10
>>>> minutes. I have severely reduced the size of examples and tests, which
>>>> now
>>>> use smaller datasets and cached resources.
>>>>
>>>> On linux, unit tests require 30 seconds more or less, and examples 40
>>>> seconds. On the other hand, macOS tests take 100 seconds, and 75 for the
>>>> examples. The issue is that sometimes the check runs in less than 10
>>>> minutes, sometimes it needs a little bit more.
>>>>
>>>> However I am out of ideas on how to further reduce examples and tests...
>>>> The vignette is really extensive, but since SPB uses the "--no-vignette"
>>>> option this should not influence heavily on this behavior, at least to
>>>> my
>>>> understanding.
>>>>
>>>> Sorry for bothering you,
>>>> Best regards,
>>>> Jacopo
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
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>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
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