[Bioc-devel] Check time on macOS (MIRit)

[Vincent Carey]

We need a bit of internal discussion before committing to this notion.  I
will get back to the list on this.

On Wed, Feb 7, 2024 at 6:34 AM Jacopo Ronchi <jacopo.ronchi using unimib.it>
wrote:

> Dear Vincent, thanks for your answer. So, at least for now, can I ignore
> the warning on macOS for the submission of MIRit?
>
> Il mer 7 feb 2024, 12:26 Vincent Carey <stvjc using channing.harvard.edu> ha
> scritto:
>
>> Thanks Jacopo.  You shouldn't have to struggle.  We are aware of
>> disparities of platform
>> performance and are working to improve the build process.  It will take
>> time.  I believe that
>> achievement of acceptable timings on the linux platform should be the key
>> goal at
>> this time.
>>
>> On Wed, Feb 7, 2024 at 5:18 AM Jacopo Ronchi <jacopo.ronchi using unimib.it>
>> wrote:
>>
>>> Dear developers,
>>>
>>> I am struggling to reduce R CMD check times for my package, MIRit, on
>>> macOS. The check on linux takes 4 minutes, while on macOS it needs 9/10
>>> minutes. I have severely reduced the size of examples and tests, which
>>> now
>>> use smaller datasets and cached resources.
>>>
>>> On linux, unit tests require 30 seconds more or less, and examples 40
>>> seconds. On the other hand, macOS tests take 100 seconds, and 75 for the
>>> examples. The issue is that sometimes the check runs in less than 10
>>> minutes, sometimes it needs a little bit more.
>>>
>>> However I am out of ideas on how to further reduce examples and tests...
>>> The vignette is really extensive, but since SPB uses the "--no-vignette"
>>> option this should not influence heavily on this behavior, at least to my
>>> understanding.
>>>
>>> Sorry for bothering you,
>>> Best regards,
>>> Jacopo
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
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