[Bioc-devel] [+externe Mail+] Re: pwOmics package get error message for Linux check

[Martin Grigorov]

Dear Maren,

Do you need more help with this ?
Both https://code.bioconductor.org/browse/pwOmics/commits/devel and
https://github.com/MarenS2/pwOmics don't have the change yet.

Regards,
Martin

On Tue, Aug 8, 2023 at 3:39 PM Sitte, Maren <
Maren.Sitte using med.uni-goettingen.de> wrote:

> Dear Martin,
>
>
> thank you very much for the quick response.
>
> I will apply your advice and add the package to "Suggests".
>
>
> Kind regards
>
> Maren
>
>
> ------------------------------------------------------
>
> NGS Integrative Genomics (NIG), Core Unit
> Department of Human Genetics
> University Medical Center Göttingen (UMG)
> Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany
> Contact : 0551 39-60778
> ------------------------------
> *Von:* Martin Grigorov <martin.grigorov using gmail.com>
> *Gesendet:* Dienstag, 8. August 2023 14:36:27
> *An:* Sitte, Maren
> *Cc:* Schoeps, Torsten; bioc-devel using r-project.org
> *Betreff:* [+externe Mail+] Re: [Bioc-devel] pwOmics package get error
> message for Linux check
>
> Hi,
>
> On Tue, 8 Aug 2023 at 12:32, Sitte, Maren <
> Maren.Sitte using med.uni-goettingen.de> wrote:
>
>> Dear Bioconductor Developers,
>>
>>
>>  I received an email that my package "pwOmics" gets an error in the check
>> under Linux.
>>  Install and build gets an OK, but check shows an error.
>>
>>  I had a look and the problem seems to be:
>>
>>  > BiocGenerics:::testPackage("pwOmics")
>> Error in library("RUnit", quietly = TRUE) :
>> there is no package called 'RUnit'
>> Calls: <Anonymous> -> library
>> Execution halted
>>
>> I checked and the RUnit package is still available on Bioconductor and
>> can still be installed. So I can't fully understand the error message.
>> Could you help me resolve this error message?
>
>
> You need to add RUnit in the list of “Suggests” in the DESCRIPTION file.
>
> Regards,
> Martin
>
>
>>
>> Thank you for the support!
>> Kind regards
>> Maren
>>
>>
>> ------------------------------------------------------
>>
>> NGS Integrative Genomics (NIG), Core Unit
>> Department of Human Genetics
>> University Medical Center Göttingen (UMG)
>> Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany
>> Contact : 0551 39-60778
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel using r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>

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