[Bioc-devel] Omada package failing due to removed dependency

Sokratis Kariotis @okr@t|@k@r|ot|@ @end|ng |rom gm@||@com
Thu Aug 10 08:44:13 CEST 2023 

Hey all,

Is this fixed now? I think I can see all pass, but on the actual website
its still on error. Thanks!

Cheers,
Sokratis

On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <sokratiskariotis using gmail.com>
wrote:

> Hey,
>
> I believe I have resolved the conflicts and now can run: *git push
> upstream main:devel*
> with Everything up-to-date as a result. However, *git push origin main*
> does not yield
> anything and it keeps hanging without a message. I checked https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
> and the last commit is April.
>
>
> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <Lori.Shepherd using roswellpark.org>
> wrote:
>
>> You'll need to find the merge conflicts and resolve them. Recommit those
>> files and then it should go.
>>
>> Lori Shepherd - Kern
>>
>> Bioconductor Core Team
>>
>> Roswell Park Comprehensive Cancer Center
>>
>> Department of Biostatistics & Bioinformatics
>>
>> Elm & Carlton Streets
>>
>> Buffalo, New York 14263
>> ------------------------------
>> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
>> Sokratis Kariotis <sokratiskariotis using gmail.com>
>> *Sent:* Monday, July 31, 2023 7:27 AM
>> *To:* Martin Grigorov <martin.grigorov using gmail.com>
>> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>> dependency
>>
>> Tried but its Already up to date.
>>
>> On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, <martin.grigorov using gmail.com>
>> wrote:
>>
>> > Hi Sokratis,
>> >
>> > You need to do "git pull --rebase" before trying to push.
>> > Most probably the version has been bumped upstream.
>> >
>> > Regards,
>> > Martin
>> >
>> > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <
>> > sokratiskariotis using gmail.com> wrote:
>> >
>> >> Hey all,
>> >>
>> >> I created a new key and now I can commit etc but there is a conflict
>> that
>> >> is not allowing me to go ahead.
>> >>
>> >> My commands:
>> >> git add .
>> >> git commit -m "Update metrics"
>> >> git push upstream main:devel
>> >>
>> >> *The above results in the following error:*
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >> *Enumerating objects: 19, done.Counting objects: 100% (17/17),
>> done.Delta
>> >> compression using up to 16 threadsCompressing objects: 100% (11/11),
>> >> done.Writing objects: 100% (11/11), 4.78 KiB | 4.78 MiB/s, done.Total
>> 11
>> >> (delta 7), reused 0 (delta 0), pack-reused 0remote: Error: You cannot
>> push
>> >> without resolving merge conflicts.remote:remote: Please check the
>> files in
>> >> the commit pushed to the git-serverremote: for merge conflict markers
>> like
>> >> '<<<<<<<', '========', '>>>>>>>'.remote:To
>> >> git.bioconductor.org:packages/omada ! [remote rejected] main -> devel
>> >> (pre-receive hook declined)error: failed to push some refs to
>> >> 'git.bioconductor.org:packages/omada'*
>> >>
>> >>
>> >>
>> >> On Mon, Jul 31, 2023 at 3:36 PM Mike Smith <grimbough using gmail.com>
>> wrote:
>> >>
>> >> > Hi Sokratis,
>> >> >
>> >> > Everything in Bioconductor is built around the central Bioconductor
>> git
>> >> > repositories.  The only way to get changes out to users is to commit
>> >> them
>> >> > to git.bioconductor.org and then the build system will pick those
>> up,
>> >> run
>> >> > the tests and checks, create new versions of packages, and make them
>> >> > available for distribution.
>> >> >
>> >> > Perhaps you can include the git command you're running to submit the
>> >> > changes and a copy of the exact error you're receiving.  That might
>> help
>> >> > the team suggest a solution.
>> >> >
>> >> > Best regards,
>> >> > Mike
>> >> >
>> >> > On Fri, 28 Jul 2023 at 08:32, Sokratis Kariotis <
>> >> > sokratiskariotis using gmail.com> wrote:
>> >> >
>> >> >> Hey both,
>> >> >>
>> >> >> I have edited the package code but I'm having some difficulties
>> >> pushing it
>> >> >> to trigger another build (github passphrase). Is there another way
>> to
>> >> >> trigger the build? Thanks!
>> >> >>
>> >> >> Cheers,
>> >> >> Sokratis
>> >> >>
>> >> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
>> >> Lori.Shepherd using roswellpark.org
>> >> >> >
>> >> >> wrote:
>> >> >>
>> >> >> > We can give you a little more time (a few weeks) to fix the
>> package
>> >> but
>> >> >> > please fix as soon as possible to avoid deprecation.
>> >> >> >
>> >> >> > Cheers,
>> >> >> >
>> >> >> > Lori Shepherd - Kern
>> >> >> >
>> >> >> > Bioconductor Core Team
>> >> >> >
>> >> >> > Roswell Park Comprehensive Cancer Center
>> >> >> >
>> >> >> > Department of Biostatistics & Bioinformatics
>> >> >> >
>> >> >> > Elm & Carlton Streets
>> >> >> >
>> >> >> > Buffalo, New York 14263
>> >> >> > ------------------------------
>> >> >> > *From:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>> >> >> > *Sent:* Monday, July 10, 2023 10:27 AM
>> >> >> > *To:* Kern, Lori <Lori.Shepherd using RoswellPark.org>
>> >> >> > *Cc:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>;
>> >> >> > bioc-devel using r-project.org <bioc-devel using r-project.org>
>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>> >> >> > dependency
>> >> >> >
>> >> >> > Hey both,
>> >> >> >
>> >> >> > I have checked the package license (GPL) and it should be fine to
>> use
>> >> >> the
>> >> >> > code. However, I am having difficulty finding the actual code to
>> >> >> calculate
>> >> >> > the internal metrics I am using (used in Omada's function
>> >> >> > cluster_voting.R). I can only find the wrapper function but not
>> the
>> >> ones
>> >> >> > that actually calculate the metrics. I am not sure how to proceed
>> >> with
>> >> >> this
>> >> >> > in time, so the Omada package won't get deprecated.
>> >> >> >
>> >> >> > Regards,
>> >> >> > Sokratis
>> >> >> >
>> >> >> > On Fri, Jul 7, 2023 at 1:03 AM Kern, Lori <
>> >> >> Lori.Shepherd using roswellpark.org>
>> >> >> > wrote:
>> >> >> >
>> >> >> > We would not hunt down the lab especially for CRAN packages,  but
>> you
>> >> >> > could reach out if you like.  That would probably be a recommended
>> >> >> action
>> >> >> > to either ask someone from their lab to maintain or if you are
>> >> willing
>> >> >> and
>> >> >> > you really want the package around you could ask the lab if they
>> mind
>> >> >> you
>> >> >> > volunteering to be the new maintainer.
>> >> >> >
>> >> >> > There could see two options for rewriting/maintaining.
>> >> >> >
>> >> >> > 1. Take over maintenance of the package and resubmit to CRAN
>> >> >> > It's a little tricky cause this is a CRAN package so I'm not sure
>> on
>> >> >> their
>> >> >> > exact policy of taking over an abandoned package. If this is
>> >> desired,  I
>> >> >> > would reach out to CRAN to find out their exact policy
>> >> >> > 2. Move needed code to your Bioconductor package
>> >> >> > You'll have to check the original package license to make sure
>> this
>> >> is
>> >> >> > allowed under the license of the package. You will still want to
>> give
>> >> >> the
>> >> >> > original authors/maintainer credit. I would say to be safe I would
>> >> >> include
>> >> >> > them as contributors/authors in the DESCRITPION Authors using R field
>> and
>> >> in
>> >> >> > the R code I would add a comment above the code to reference
>> original
>> >> >> > package citation and stating it was copied from there.  I'm not a
>> >> >> lawyer or
>> >> >> > license/copy right expert so not sure if that would be good enough
>> >> but
>> >> >> that
>> >> >> > would be my take on it.
>> >> >> >
>> >> >> > Lori Shepherd - Kern
>> >> >> >
>> >> >> > Bioconductor Core Team
>> >> >> >
>> >> >> > Roswell Park Comprehensive Cancer Center
>> >> >> >
>> >> >> > Department of Biostatistics & Bioinformatics
>> >> >> >
>> >> >> > Elm & Carlton Streets
>> >> >> >
>> >> >> > Buffalo, New York 14263
>> >> >> > ------------------------------
>> >> >> > *From:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>> >> >> > *Sent:* Thursday, July 6, 2023 1:58 AM
>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>> >> >> > *Cc:* Kern, Lori <Lori.Shepherd using RoswellPark.org>;
>> >> >> bioc-devel using r-project.org
>> >> >> > <bioc-devel using r-project.org>
>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>> >> >> > dependency
>> >> >> >
>> >> >> >
>> https://secure-web.cisco.com/1EhksuB6k_yI--kj3_CN8LCovo7wAy9Epj-_8W4VV7FAbktome6nKnRrktDrrzsGXq6OrPZzxo7-CPAnrnZ4mFbi1Z-z81fIELFunE2pI8wuUlGU72f4Irnh1TjSXymZHtkM8_5OEv8EPAA1U7i6tUetGY5G8ZODgjnDQZaarKkEspvU92RNlxjLqzIKy-vIrX-TN-TtC-dDyaqOyIVUNZKJws7sU-V4VFjfkwoM5rK9BAdI4jIqcxygwdSeB5XsZftYZVy7nlTD1Rrp46lnGBMqvfBpVOQjd93wM9KQU1nafzbzIag4rrGGGlr_D4ZWB/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>> >> >> > <
>> >> >>
>> >>
>> https://secure-web.cisco.com/1pCvxIL3lfzw2yMAoq1pXQ5JiavYeyZHI2qtDauHw4xwZZBxaV-dAKGWcVKgwz09vF4YJJGVvkcQloDj0mJOUxj7BI3WPu_1Ze3vDW0a9syxuRsiQNOGsRkJ8BaWBdlxOdRBAw39KujDDGqb_DPfL6IsjHK5UCqoCpzw39GduVcBLFIutoPM8Nqjgp8ArDuh-oK-Bxe-huDYCoLXUX5GyU_fEG81AEtF-osCFtJNLRiQBggrsxcViF8mNihzVj8-UT4cNawHmz7xye_KNs45WZOxnVljiq5QQHuIGCeXRkbYBUvrpcEoTootlVxLloYK0/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>> >> >> >
>> >> >> > That is, perhaps, not surprising...
>> >> >> >
>> >> >> > Package seems to be too good to be abandoned. I wonder if anyone
>> from
>> >> >> > their lab
>> >> >> > <
>> >> >>
>> >>
>> https://secure-web.cisco.com/1IisY82Mh0-7_0tTgq7v7MgjvGFKIBucg15oqE_SNpUPzwuvYYaCPgz427Efo9Xga7j3PYM6msIsM8GJAK7ofsjmhrfAG3_kBGCmTdF0gVYBUz17CdZjNygLUpDMXPSt6h5CfKAjX_SrymhwTWvvEuyH1cH3nCYhVkVd5xfdd2W5azA0g9MJ4bPASnxJwY9quFxu_6CAIuYXkkO_DqiO9NC6Nb22USMev1V4qh5A3IX2kg6l60sRbM9gDQWjNwbJAPSnWq9G5setIw9CNP8avnjON5nhm_cjNhhn6s6kY07wwiSQ4sSQqsekskzOjhbm1/https%3A%2F%2Fmodalx.parisnanterre.fr%2Fmembres
>> >> >> >
>> >> >> > could take over maintenance, if you still bother to ask...
>> >> >> >
>> >> >> > Best,
>> >> >> > Oleksii
>> >> >> >
>> >> >> > On Thu, 6 Jul 2023 at 06:23, Sokratis Kariotis <
>> >> >> sokratiskariotis using gmail.com>
>> >> >> > wrote:
>> >> >> >
>> >> >> > Hey,
>> >> >> >
>> >> >> > I haven't received any responses from the maintainer of
>> ClusterCrit
>> >> so I
>> >> >> > guess I will have to re-write the code used. How can I properly go
>> >> about
>> >> >> > this and credit the authors as well? Thanks!
>> >> >> >
>> >> >> > Cheers,
>> >> >> > Sokratis
>> >> >> >
>> >> >> > On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <
>> >> >> Lori.Shepherd using roswellpark.org>
>> >> >> > wrote:
>> >> >> >
>> >> >> > We do not allow archived packages to be used.  All dependencies
>> must
>> >> be
>> >> >> on
>> >> >> > CRAN or Bioconductor. So yes if you can get them to reinstate the
>> >> >> package
>> >> >> > on CRAN that would be ideal.  If not you will have to remove the
>> >> package
>> >> >> > from the dependency list and either re-write the code used (giving
>> >> >> original
>> >> >> > clusterCrit authors credit) or remove the functionality used from
>> >> that
>> >> >> > package.
>> >> >> >
>> >> >> > Lori Shepherd - Kern
>> >> >> >
>> >> >> > Bioconductor Core Team
>> >> >> >
>> >> >> > Roswell Park Comprehensive Cancer Center
>> >> >> >
>> >> >> > Department of Biostatistics & Bioinformatics
>> >> >> >
>> >> >> > Elm & Carlton Streets
>> >> >> >
>> >> >> > Buffalo, New York 14263
>> >> >> > ------------------------------
>> >> >> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf
>> of
>> >> >> > Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>> >> >> > *Sent:* Thursday, June 29, 2023 5:36 AM
>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>> >> >> > *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>> >> >> > dependency
>> >> >> >
>> >> >> > Hi,
>> >> >> > in this case maybe it's worth reaching out to the maintainer of
>> >> >> > clusterCrit. It was removed from CRAN because of (seems-to-be)
>> minor
>> >> >> > warnings, which can be addressed by the clusterCrit developer in
>> no
>> >> >> time...
>> >> >> >
>> >> >> > Best,
>> >> >> > Oleksii
>> >> >> >
>> >> >> > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
>> >> >> > sokratiskariotis using gmail.com>
>> >> >> > wrote:
>> >> >> >
>> >> >> > > Dear Bioconductor team,
>> >> >> > >
>> >> >> > > I received an email that my package "Omada" is failing in
>> release
>> >> and
>> >> >> > > devel. I had a look and the problem seems to be: *ERROR:
>> dependency
>> >> >> > > ‘clusterCrit’ is not available for package ‘omada’*. So the
>> package
>> >> >> > > clusterCrit was removed. Is there a way I can use a archived
>> >> version
>> >> >> of
>> >> >> > it
>> >> >> > > (or something similar) so I don't have to rewrite code based on
>> new
>> >> >> > > packages to avoid potentially inconsistencies? Please advise,
>> thank
>> >> >> you!
>> >> >> > >
>> >> >> > > Cheers,
>> >> >> > > Dr. Sokratis Kariotis (PhD)
>> >> >> > > Agency for Science, Technology and Research (A*STAR)
>> >> >> > > Singapore Immunology Network (SIgN)
>> >> >> > > Twitter: @s_kariotis <
>> >> >> >
>> >> >>
>> >>
>> https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>> >> >> > >
>> >> >> > > LinkedIn:
>> >> >> >
>> >> >>
>> >>
>> http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >> >> > >
>> >> >> > >         [[alternative HTML version deleted]]
>> >> >> > >
>> >> >> > > _______________________________________________
>> >> >> > > Bioc-devel using r-project.org mailing list
>> >> >> > >
>> >> >> >
>> >> >>
>> >>
>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>> >> >> > >
>> >> >> >
>> >> >> >         [[alternative HTML version deleted]]
>> >> >> >
>> >> >> > _______________________________________________
>> >> >> > Bioc-devel using r-project.org mailing list
>> >> >> >
>> >> >> >
>> >> >>
>> >>
>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>> >> >> >
>> >> >> >
>> >> >> > This email message may contain legally privileged and/or
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>> >> >> > information. If you are not the intended recipient(s), or the
>> >> employee
>> >> >> or
>> >> >> > agent responsible for the delivery of this message to the intended
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>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > --
>> >> >> > Cheers,
>> >> >> > Sokratis Kariotis
>> >> >> > PhD Student
>> >> >> > University of Sheffield, Medical School
>> >> >> > MedTech
>> >> >> > <
>> >> >>
>> >>
>> https://secure-web.cisco.com/1j_t_6XlNHmK_Mlrd4WRabc9QOpzT2OGES5vH7ZXf-zkhvpeT6fGj6r1c6HMwcYrnxIzGZ6HwikAhhXIh8OkaEgWqigSPXAd_m0NPSjZf7cr7xi4b003k8sYSFAOfwcStP8WCMJQEHURgiHkNDvUmrUdfJYydQO9lMNOyfaP6SnxI2mQX21fOBWIj5wlIAVh9_pBFujbt_XfCBhHL495EtB_s0ntbiowBalE7bhEa4FullCdFTSex4VfICmSriWx91cSPmk1TzmAHv6KZtr7XqAgLH4OzGlGEUTMdjmcrYOoLTC5XpKAljIZMsCwu8hDP/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>> >> >> >
>> >> >> > President
>> >> >> > Twitter: @s_kariotis
>> >> >> > <
>> >> >>
>> >>
>> https://secure-web.cisco.com/13IN8xWDrADy-iyp1mknOrX5y2tJixhXPBcywL3EoIE7tOUCkSYs7hbAy2slZfzwMH3Bq9AnScXs3HK_KnDOO2kihBQdfM9nIHxnoa1vAkVFfYH8L_ns7w9KGqC0pzUOOxThE_ZMGVWk1LyQyf-RPrv_HY7RqQZo1IEYNirDTKWBu2lkLCH8qvs8lRMm79wx5eRwdZVYNH0uq7g7EcP_vvK9d8vQ534dzt0hOgHaDByQVi2reoXzwifR0pOYP-6LhdI15nbDtZHxMBmTvueysM77gfHBn7_IUHK6y9-biSIidTmH3GlJMkhk83x7UR5Jk/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>> >> >> >
>> >> >> > LinkedIn:
>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >> >> > <
>> >> >>
>> >>
>> http://secure-web.cisco.com/1h1oCsLmDI6MQdDDyPKrhabJrDBtBogVZA8wMdTLiZENtCtnsB9UQqak12XHMegX9sP0mimjSxawrR5u0VlKLv-D4lrX8u8A05PST1zfXM9VJX6E41Hj2-TOTZm9uOWc8hfxBrCT6UPjQ0X5pFh0sQRgC5tqu2Ks1EALVXZvSixGddS_zQ2C0bQhnc9KLJe8J3jtxPOkUz7QqCjcwpfgixL9ls_ysxmn2OGFxfiMwTmWgUXWcfWwvOXy6OhfeAl_IDK9USdONEsQETuVSgt7f2eVi5DJJBy_4eVwIVz3GV6iTGr2VjRBlh98HxZMAr-iP/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > This email message may contain legally privileged and/or
>> confidential
>> >> >> > information. If you are not the intended recipient(s), or the
>> >> employee
>> >> >> or
>> >> >> > agent responsible for the delivery of this message to the intended
>> >> >> > recipient(s), you are hereby notified that any disclosure,
>> copying,
>> >> >> > distribution, or use of this email message is prohibited. If you
>> have
>> >> >> > received this message in error, please notify the sender
>> immediately
>> >> by
>> >> >> > e-mail and delete this email message from your computer. Thank
>> you.
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > --
>> >> >> > Cheers,
>> >> >> > Sokratis Kariotis
>> >> >> > PhD Student
>> >> >> > University of Sheffield, Medical School
>> >> >> > MedTech
>> >> >> > <
>> >> >>
>> >>
>> https://secure-web.cisco.com/1EbU56JtxgdwdoJoUZSkRfzViaYzT5UpVv7Wn4bHXpw7_iNUn_et52ACzsUWbzs2Du309DRo4wtQgGcVuDWVIPx5vtUsOovTfb6A-HIBq3NSje0v9lBELQCeYZvBzjm0t2kAdce_aXnf8m3mH7-cYUd0C6Wu2R7erAmQwuoI22clJuDcztgq-JhMyIczKcN_UhCUNAzJ-b_kHKI3mxzoO76dg0N8g2MIp_pHBC3x0rVQno00wElfOCtr3poLLQZwpcZCTPoAQmYs-Dfin4Lwoy2-B9Qn5txtHoCygaeneDxgiTHVOAuILij26i2Q9cgAQ/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>> >> >> >
>> >> >> > President
>> >> >> > Twitter: @s_kariotis
>> >> >> > <
>> >> >>
>> >>
>> https://secure-web.cisco.com/1RhhMUBj_mRXVHCOKQB6We-WITw332tSjBMu7_BVsJxiUs4tE1EO3zyDwMwygB4WIh8AaEo6gPZZcTCl81Qy6PrClu7SxtC3TbzSz30XZlzOjZukAKbowWtBHiJ36lG-a4U_5dYeM6CKUfdb7MaXesg8oLlZscBYO4fVVKMdcjn0NvtsvF-RfOVtu8tVFiOw6yvb3Rt1g-2xPBcrCEEn69L2z59SnUHY8pboO84aP6YBHHPhMHXw1Quz5J7KfGN3qlcX3kehRg0RIISJKLCdu87PnMhtcbODE0T15xmjyc1mUYKmjlmwghgZF4m-UzFoP/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>> >> >> >
>> >> >> > LinkedIn:
>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >> >> > <
>> >> >>
>> >>
>> http://secure-web.cisco.com/1QlRJ-HwDhYoeQZGt2FCzKpzCEleTeJuBprI0G9qystL3HbJH4unSUkFhwBB5vlm1EWz9u50EG4S0Xnv38OXhu3-ioroUBcS0KG6x7V3cFf73lNR3mJnwnqVqzPtq9gIMtUxwnPPzS6sHVbJhDi2CyejXNt0HoO5oRi4T3Ruca3MN7ZxxXJd2gbyGVGryXBDFLrVBlg3KZ-3_m8AFoTvBpUvWv7fs0vGBQ2lWUXSoQ7JYARZ0vy5mW0a4kK2EzbxCWaOFLR6JcbDwA3T9BO006AtSM2onHVqveK_jx2VZB6CvZsLrR-VJ4j41A8IvYfuQ/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >> >> >
>> >> >> >
>> >> >> > This email message may contain legally privileged and/or
>> confidential
>> >> >> > information. If you are not the intended recipient(s), or the
>> >> employee
>> >> >> or
>> >> >> > agent responsible for the delivery of this message to the intended
>> >> >> > recipient(s), you are hereby notified that any disclosure,
>> copying,
>> >> >> > distribution, or use of this email message is prohibited. If you
>> have
>> >> >> > received this message in error, please notify the sender
>> immediately
>> >> by
>> >> >> > e-mail and delete this email message from your computer. Thank
>> you.
>> >> >> >
>> >> >>
>> >> >>
>> >> >> --
>> >> >> Cheers,
>> >> >> Sokratis Kariotis
>> >> >> PhD Student
>> >> >> University of Sheffield, Medical School
>> >> >> MedTech <
>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>> >President
>> >> >> Twitter: @s_kariotis <
>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>> >
>> >> >> LinkedIn:
>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >> >>
>> >> >>         [[alternative HTML version deleted]]
>> >> >>
>> >> >> _______________________________________________
>> >> >> Bioc-devel using r-project.org mailing list
>> >> >>
>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>> >> >>
>> >> >
>> >>
>> >> --
>> >> Cheers,
>> >> Sokratis Kariotis
>> >> PhD Student
>> >> University of Sheffield, Medical School
>> >> MedTech <
>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>> >President
>> >> Twitter: @s_kariotis <
>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>> >
>> >> LinkedIn:
>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>> >>
>> >>         [[alternative HTML version deleted]]
>> >>
>> >> _______________________________________________
>> >> Bioc-devel using r-project.org mailing list
>> >>
>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>> >>
>> >
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel using r-project.org mailing list
>>
>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>
>>
>> This email message may contain legally privileged and/or confidential
>> information. If you are not the intended recipient(s), or the employee or
>> agent responsible for the delivery of this message to the intended
>> recipient(s), you are hereby notified that any disclosure, copying,
>> distribution, or use of this email message is prohibited. If you have
>> received this message in error, please notify the sender immediately by
>> e-mail and delete this email message from your computer. Thank you.
>>
>
>
> --
> Cheers,
> Sokratis Kariotis
> PhD Student
> University of Sheffield, Medical School
> MedTech <https://www.facebook.com/medtechsheffield/>President
> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>


-- 
Cheers,
Sokratis Kariotis
PhD Student
University of Sheffield, Medical School
MedTech <https://www.facebook.com/medtechsheffield/>President
Twitter: @s_kariotis <https://twitter.com/s_kariotis>
LinkedIn: http://www.linkedin.com/in/sokratiskariotis

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