[Bioc-devel] Omada package failing due to removed dependency

Tue Aug 1 12:51:09 CEST 2023

Hi Sokratis,

You won't see an update in the build report for 24-48 hours.  The build
process happens at a specific time each day across all packages, you can't
trigger it manually, and the reports don't update until every package has
been built.  That takes about a day to complete.  If you're lucky and
commit just before the process starts it'll still be ~24 hours before you
see the results.  If you're unlucky and submit just after it'll be 2 days
before the changes are reflected in the report.

If you're interested, on
https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/ there's a
section called "Snapshot Data" which tells you when the build process
started.  At the top of the page there's "This page was generated on" which
indicates when the report was posted.

However, you can check your commits have arrived in the repository by
taking a look at https://code.bioconductor.org/browse/omada/commits/devel
That site updates every 15 minutes, and I see three new commits in the last
day, so it looks like the git commands are working for you.  Now you can
just wait to see how the next report looks.

On Tue, 1 Aug 2023 at 10:26, Sokratis Kariotis <sokratiskariotis using gmail.com>
wrote:

> Hey,
>
> I believe I have resolved the conflicts and now can run: *git push upstream
> main:devel*
> with Everything up-to-date as a result. However, *git push origin main*
> does not yield
> anything and it keeps hanging without a message. I checked
> https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
> and the last commit is April.
>
>
> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <Lori.Shepherd using roswellpark.org
> >
> wrote:
>
> > You'll need to find the merge conflicts and resolve them. Recommit those
> > files and then it should go.
> >
> > Lori Shepherd - Kern
> >
> > Bioconductor Core Team
> >
> > Roswell Park Comprehensive Cancer Center
> >
> > Department of Biostatistics & Bioinformatics
> >
> > Elm & Carlton Streets
> >
> > Buffalo, New York 14263
> > ------------------------------
> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> > Sokratis Kariotis <sokratiskariotis using gmail.com>
> > *Sent:* Monday, July 31, 2023 7:27 AM
> > *To:* Martin Grigorov <martin.grigorov using gmail.com>
> > *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
> > dependency
> >
> > Tried but its Already up to date.
> >
> > On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, <martin.grigorov using gmail.com
> >
> > wrote:
> >
> > > Hi Sokratis,
> > >
> > > You need to do "git pull --rebase" before trying to push.
> > > Most probably the version has been bumped upstream.
> > >
> > > Regards,
> > > Martin
> > >
> > > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <
> > > sokratiskariotis using gmail.com> wrote:
> > >
> > >> Hey all,
> > >>
> > >> I created a new key and now I can commit etc but there is a conflict
> > that
> > >> is not allowing me to go ahead.
> > >>
> > >> My commands:
> > >> git add .
> > >> git commit -m "Update metrics"
> > >> git push upstream main:devel
> > >>
> > >> *The above results in the following error:*
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >> *Enumerating objects: 19, done.Counting objects: 100% (17/17),
> > done.Delta
> > >> compression using up to 16 threadsCompressing objects: 100% (11/11),
> > >> done.Writing objects: 100% (11/11), 4.78 KiB | 4.78 MiB/s, done.Total
> 11
> > >> (delta 7), reused 0 (delta 0), pack-reused 0remote: Error: You cannot
> > push
> > >> without resolving merge conflicts.remote:remote: Please check the
> files
> > in
> > >> the commit pushed to the git-serverremote: for merge conflict markers
> > like
> > >> '<<<<<<<', '========', '>>>>>>>'.remote:To
> > >> git.bioconductor.org:packages/omada ! [remote rejected] main -> devel
> > >> (pre-receive hook declined)error: failed to push some refs to
> > >> 'git.bioconductor.org:packages/omada'*
> > >>
> > >>
> > >>
> > >> On Mon, Jul 31, 2023 at 3:36 PM Mike Smith <grimbough using gmail.com>
> wrote:
> > >>
> > >> > Hi Sokratis,
> > >> >
> > >> > Everything in Bioconductor is built around the central Bioconductor
> > git
> > >> > repositories.  The only way to get changes out to users is to commit
> > >> them
> > >> > to git.bioconductor.org and then the build system will pick those
> up,
> > >> run
> > >> > the tests and checks, create new versions of packages, and make them
> > >> > available for distribution.
> > >> >
> > >> > Perhaps you can include the git command you're running to submit the
> > >> > changes and a copy of the exact error you're receiving.  That might
> > help
> > >> > the team suggest a solution.
> > >> >
> > >> > Best regards,
> > >> > Mike
> > >> >
> > >> > On Fri, 28 Jul 2023 at 08:32, Sokratis Kariotis <
> > >> > sokratiskariotis using gmail.com> wrote:
> > >> >
> > >> >> Hey both,
> > >> >>
> > >> >> I have edited the package code but I'm having some difficulties
> > >> pushing it
> > >> >> to trigger another build (github passphrase). Is there another way
> to
> > >> >> trigger the build? Thanks!
> > >> >>
> > >> >> Cheers,
> > >> >> Sokratis
> > >> >>
> > >> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
> > >> Lori.Shepherd using roswellpark.org
> > >> >> >
> > >> >> wrote:
> > >> >>
> > >> >> > We can give you a little more time (a few weeks) to fix the
> package
> > >> but
> > >> >> > please fix as soon as possible to avoid deprecation.
> > >> >> >
> > >> >> > Cheers,
> > >> >> >
> > >> >> > Lori Shepherd - Kern
> > >> >> >
> > >> >> > Bioconductor Core Team
> > >> >> >
> > >> >> > Roswell Park Comprehensive Cancer Center
> > >> >> >
> > >> >> > Department of Biostatistics & Bioinformatics
> > >> >> >
> > >> >> > Elm & Carlton Streets
> > >> >> >
> > >> >> > Buffalo, New York 14263
> > >> >> > ------------------------------
> > >> >> > *From:* Sokratis Kariotis <sokratiskariotis using gmail.com>
> > >> >> > *Sent:* Monday, July 10, 2023 10:27 AM
> > >> >> > *To:* Kern, Lori <Lori.Shepherd using RoswellPark.org>
> > >> >> > *Cc:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>;
> > >> >> > bioc-devel using r-project.org <bioc-devel using r-project.org>
> > >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
> > >> >> > dependency
> > >> >> >
> > >> >> > Hey both,
> > >> >> >
> > >> >> > I have checked the package license (GPL) and it should be fine to
> > use
> > >> >> the
> > >> >> > code. However, I am having difficulty finding the actual code to
> > >> >> calculate
> > >> >> > the internal metrics I am using (used in Omada's function
> > >> >> > cluster_voting.R). I can only find the wrapper function but not
> the
> > >> ones
> > >> >> > that actually calculate the metrics. I am not sure how to proceed
> > >> with
> > >> >> this
> > >> >> > in time, so the Omada package won't get deprecated.
> > >> >> >
> > >> >> > Regards,
> > >> >> > Sokratis
> > >> >> >
> > >> >> > On Fri, Jul 7, 2023 at 1:03 AM Kern, Lori <
> > >> >> Lori.Shepherd using roswellpark.org>
> > >> >> > wrote:
> > >> >> >
> > >> >> > We would not hunt down the lab especially for CRAN packages,  but
> > you
> > >> >> > could reach out if you like.  That would probably be a
> recommended
> > >> >> action
> > >> >> > to either ask someone from their lab to maintain or if you are
> > >> willing
> > >> >> and
> > >> >> > you really want the package around you could ask the lab if they
> > mind
> > >> >> you
> > >> >> > volunteering to be the new maintainer.
> > >> >> >
> > >> >> > There could see two options for rewriting/maintaining.
> > >> >> >
> > >> >> > 1. Take over maintenance of the package and resubmit to CRAN
> > >> >> > It's a little tricky cause this is a CRAN package so I'm not sure
> > on
> > >> >> their
> > >> >> > exact policy of taking over an abandoned package. If this is
> > >> desired,  I
> > >> >> > would reach out to CRAN to find out their exact policy
> > >> >> > 2. Move needed code to your Bioconductor package
> > >> >> > You'll have to check the original package license to make sure
> this
> > >> is
> > >> >> > allowed under the license of the package. You will still want to
> > give
> > >> >> the
> > >> >> > original authors/maintainer credit. I would say to be safe I
> would
> > >> >> include
> > >> >> > them as contributors/authors in the DESCRITPION Authors using R field
> > and
> > >> in
> > >> >> > the R code I would add a comment above the code to reference
> > original
> > >> >> > package citation and stating it was copied from there.  I'm not a
> > >> >> lawyer or
> > >> >> > license/copy right expert so not sure if that would be good
> enough
> > >> but
> > >> >> that
> > >> >> > would be my take on it.
> > >> >> >
> > >> >> > Lori Shepherd - Kern
> > >> >> >
> > >> >> > Bioconductor Core Team
> > >> >> >
> > >> >> > Roswell Park Comprehensive Cancer Center
> > >> >> >
> > >> >> > Department of Biostatistics & Bioinformatics
> > >> >> >
> > >> >> > Elm & Carlton Streets
> > >> >> >
> > >> >> > Buffalo, New York 14263
> > >> >> > ------------------------------
> > >> >> > *From:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
> > >> >> > *Sent:* Thursday, July 6, 2023 1:58 AM
> > >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
> > >> >> > *Cc:* Kern, Lori <Lori.Shepherd using RoswellPark.org>;
> > >> >> bioc-devel using r-project.org
> > >> >> > <bioc-devel using r-project.org>
> > >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
> > >> >> > dependency
> > >> >> >
> > >> >> >
> >
> https://secure-web.cisco.com/1EhksuB6k_yI--kj3_CN8LCovo7wAy9Epj-_8W4VV7FAbktome6nKnRrktDrrzsGXq6OrPZzxo7-CPAnrnZ4mFbi1Z-z81fIELFunE2pI8wuUlGU72f4Irnh1TjSXymZHtkM8_5OEv8EPAA1U7i6tUetGY5G8ZODgjnDQZaarKkEspvU92RNlxjLqzIKy-vIrX-TN-TtC-dDyaqOyIVUNZKJws7sU-V4VFjfkwoM5rK9BAdI4jIqcxygwdSeB5XsZftYZVy7nlTD1Rrp46lnGBMqvfBpVOQjd93wM9KQU1nafzbzIag4rrGGGlr_D4ZWB/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
> > >> >> > <
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1pCvxIL3lfzw2yMAoq1pXQ5JiavYeyZHI2qtDauHw4xwZZBxaV-dAKGWcVKgwz09vF4YJJGVvkcQloDj0mJOUxj7BI3WPu_1Ze3vDW0a9syxuRsiQNOGsRkJ8BaWBdlxOdRBAw39KujDDGqb_DPfL6IsjHK5UCqoCpzw39GduVcBLFIutoPM8Nqjgp8ArDuh-oK-Bxe-huDYCoLXUX5GyU_fEG81AEtF-osCFtJNLRiQBggrsxcViF8mNihzVj8-UT4cNawHmz7xye_KNs45WZOxnVljiq5QQHuIGCeXRkbYBUvrpcEoTootlVxLloYK0/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
> > >> >> >
> > >> >> > That is, perhaps, not surprising...
> > >> >> >
> > >> >> > Package seems to be too good to be abandoned. I wonder if anyone
> > from
> > >> >> > their lab
> > >> >> > <
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1IisY82Mh0-7_0tTgq7v7MgjvGFKIBucg15oqE_SNpUPzwuvYYaCPgz427Efo9Xga7j3PYM6msIsM8GJAK7ofsjmhrfAG3_kBGCmTdF0gVYBUz17CdZjNygLUpDMXPSt6h5CfKAjX_SrymhwTWvvEuyH1cH3nCYhVkVd5xfdd2W5azA0g9MJ4bPASnxJwY9quFxu_6CAIuYXkkO_DqiO9NC6Nb22USMev1V4qh5A3IX2kg6l60sRbM9gDQWjNwbJAPSnWq9G5setIw9CNP8avnjON5nhm_cjNhhn6s6kY07wwiSQ4sSQqsekskzOjhbm1/https%3A%2F%2Fmodalx.parisnanterre.fr%2Fmembres
> > >> >> >
> > >> >> > could take over maintenance, if you still bother to ask...
> > >> >> >
> > >> >> > Best,
> > >> >> > Oleksii
> > >> >> >
> > >> >> > On Thu, 6 Jul 2023 at 06:23, Sokratis Kariotis <
> > >> >> sokratiskariotis using gmail.com>
> > >> >> > wrote:
> > >> >> >
> > >> >> > Hey,
> > >> >> >
> > >> >> > I haven't received any responses from the maintainer of
> ClusterCrit
> > >> so I
> > >> >> > guess I will have to re-write the code used. How can I properly
> go
> > >> about
> > >> >> > this and credit the authors as well? Thanks!
> > >> >> >
> > >> >> > Cheers,
> > >> >> > Sokratis
> > >> >> >
> > >> >> > On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <
> > >> >> Lori.Shepherd using roswellpark.org>
> > >> >> > wrote:
> > >> >> >
> > >> >> > We do not allow archived packages to be used.  All dependencies
> > must
> > >> be
> > >> >> on
> > >> >> > CRAN or Bioconductor. So yes if you can get them to reinstate the
> > >> >> package
> > >> >> > on CRAN that would be ideal.  If not you will have to remove the
> > >> package
> > >> >> > from the dependency list and either re-write the code used
> (giving
> > >> >> original
> > >> >> > clusterCrit authors credit) or remove the functionality used from
> > >> that
> > >> >> > package.
> > >> >> >
> > >> >> > Lori Shepherd - Kern
> > >> >> >
> > >> >> > Bioconductor Core Team
> > >> >> >
> > >> >> > Roswell Park Comprehensive Cancer Center
> > >> >> >
> > >> >> > Department of Biostatistics & Bioinformatics
> > >> >> >
> > >> >> > Elm & Carlton Streets
> > >> >> >
> > >> >> > Buffalo, New York 14263
> > >> >> > ------------------------------
> > >> >> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf
> of
> > >> >> > Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
> > >> >> > *Sent:* Thursday, June 29, 2023 5:36 AM
> > >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
> > >> >> > *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> > >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
> > >> >> > dependency
> > >> >> >
> > >> >> > Hi,
> > >> >> > in this case maybe it's worth reaching out to the maintainer of
> > >> >> > clusterCrit. It was removed from CRAN because of (seems-to-be)
> > minor
> > >> >> > warnings, which can be addressed by the clusterCrit developer in
> no
> > >> >> time...
> > >> >> >
> > >> >> > Best,
> > >> >> > Oleksii
> > >> >> >
> > >> >> > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
> > >> >> > sokratiskariotis using gmail.com>
> > >> >> > wrote:
> > >> >> >
> > >> >> > > Dear Bioconductor team,
> > >> >> > >
> > >> >> > > I received an email that my package "Omada" is failing in
> release
> > >> and
> > >> >> > > devel. I had a look and the problem seems to be: *ERROR:
> > dependency
> > >> >> > > ‘clusterCrit’ is not available for package ‘omada’*. So the
> > package
> > >> >> > > clusterCrit was removed. Is there a way I can use a archived
> > >> version
> > >> >> of
> > >> >> > it
> > >> >> > > (or something similar) so I don't have to rewrite code based on
> > new
> > >> >> > > packages to avoid potentially inconsistencies? Please advise,
> > thank
> > >> >> you!
> > >> >> > >
> > >> >> > > Cheers,
> > >> >> > > Dr. Sokratis Kariotis (PhD)
> > >> >> > > Agency for Science, Technology and Research (A*STAR)
> > >> >> > > Singapore Immunology Network (SIgN)
> > >> >> > > Twitter: @s_kariotis <
> > >> >> >
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis
> > >> >> > >
> > >> >> > > LinkedIn:
> > >> >> >
> > >> >>
> > >>
> >
> http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >> >> > >
> > >> >> > >         [[alternative HTML version deleted]]
> > >> >> > >
> > >> >> > > _______________________________________________
> > >> >> > > Bioc-devel using r-project.org mailing list
> > >> >> > >
> > >> >> >
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
> > >> >> > >
> > >> >> >
> > >> >> >         [[alternative HTML version deleted]]
> > >> >> >
> > >> >> > _______________________________________________
> > >> >> > Bioc-devel using r-project.org mailing list
> > >> >> >
> > >> >> >
> > >> >>
> > >>
> >
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> > >> >> >
> > >> >> >
> > >> >> > This email message may contain legally privileged and/or
> > confidential
> > >> >> > information. If you are not the intended recipient(s), or the
> > >> employee
> > >> >> or
> > >> >> > agent responsible for the delivery of this message to the
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> > >> >> >
> > >> >> >
> > >> >> >
> > >> >> > --
> > >> >> > Cheers,
> > >> >> > Sokratis Kariotis
> > >> >> > PhD Student
> > >> >> > University of Sheffield, Medical School
> > >> >> > MedTech
> > >> >> > <
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1j_t_6XlNHmK_Mlrd4WRabc9QOpzT2OGES5vH7ZXf-zkhvpeT6fGj6r1c6HMwcYrnxIzGZ6HwikAhhXIh8OkaEgWqigSPXAd_m0NPSjZf7cr7xi4b003k8sYSFAOfwcStP8WCMJQEHURgiHkNDvUmrUdfJYydQO9lMNOyfaP6SnxI2mQX21fOBWIj5wlIAVh9_pBFujbt_XfCBhHL495EtB_s0ntbiowBalE7bhEa4FullCdFTSex4VfICmSriWx91cSPmk1TzmAHv6KZtr7XqAgLH4OzGlGEUTMdjmcrYOoLTC5XpKAljIZMsCwu8hDP/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
> > >> >> >
> > >> >> > President
> > >> >> > Twitter: @s_kariotis
> > >> >> > <
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/13IN8xWDrADy-iyp1mknOrX5y2tJixhXPBcywL3EoIE7tOUCkSYs7hbAy2slZfzwMH3Bq9AnScXs3HK_KnDOO2kihBQdfM9nIHxnoa1vAkVFfYH8L_ns7w9KGqC0pzUOOxThE_ZMGVWk1LyQyf-RPrv_HY7RqQZo1IEYNirDTKWBu2lkLCH8qvs8lRMm79wx5eRwdZVYNH0uq7g7EcP_vvK9d8vQ534dzt0hOgHaDByQVi2reoXzwifR0pOYP-6LhdI15nbDtZHxMBmTvueysM77gfHBn7_IUHK6y9-biSIidTmH3GlJMkhk83x7UR5Jk/https%3A%2F%2Ftwitter.com%2Fs_kariotis
> > >> >> >
> > >> >> > LinkedIn:
> >
> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >> >> > <
> > >> >>
> > >>
> >
> http://secure-web.cisco.com/1h1oCsLmDI6MQdDDyPKrhabJrDBtBogVZA8wMdTLiZENtCtnsB9UQqak12XHMegX9sP0mimjSxawrR5u0VlKLv-D4lrX8u8A05PST1zfXM9VJX6E41Hj2-TOTZm9uOWc8hfxBrCT6UPjQ0X5pFh0sQRgC5tqu2Ks1EALVXZvSixGddS_zQ2C0bQhnc9KLJe8J3jtxPOkUz7QqCjcwpfgixL9ls_ysxmn2OGFxfiMwTmWgUXWcfWwvOXy6OhfeAl_IDK9USdONEsQETuVSgt7f2eVi5DJJBy_4eVwIVz3GV6iTGr2VjRBlh98HxZMAr-iP/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >> >> >
> > >> >> >
> > >> >> >
> > >> >> > This email message may contain legally privileged and/or
> > confidential
> > >> >> > information. If you are not the intended recipient(s), or the
> > >> employee
> > >> >> or
> > >> >> > agent responsible for the delivery of this message to the
> intended
> > >> >> > recipient(s), you are hereby notified that any disclosure,
> copying,
> > >> >> > distribution, or use of this email message is prohibited. If you
> > have
> > >> >> > received this message in error, please notify the sender
> > immediately
> > >> by
> > >> >> > e-mail and delete this email message from your computer. Thank
> you.
> > >> >> >
> > >> >> >
> > >> >> >
> > >> >> > --
> > >> >> > Cheers,
> > >> >> > Sokratis Kariotis
> > >> >> > PhD Student
> > >> >> > University of Sheffield, Medical School
> > >> >> > MedTech
> > >> >> > <
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1EbU56JtxgdwdoJoUZSkRfzViaYzT5UpVv7Wn4bHXpw7_iNUn_et52ACzsUWbzs2Du309DRo4wtQgGcVuDWVIPx5vtUsOovTfb6A-HIBq3NSje0v9lBELQCeYZvBzjm0t2kAdce_aXnf8m3mH7-cYUd0C6Wu2R7erAmQwuoI22clJuDcztgq-JhMyIczKcN_UhCUNAzJ-b_kHKI3mxzoO76dg0N8g2MIp_pHBC3x0rVQno00wElfOCtr3poLLQZwpcZCTPoAQmYs-Dfin4Lwoy2-B9Qn5txtHoCygaeneDxgiTHVOAuILij26i2Q9cgAQ/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
> > >> >> >
> > >> >> > President
> > >> >> > Twitter: @s_kariotis
> > >> >> > <
> > >> >>
> > >>
> >
> https://secure-web.cisco.com/1RhhMUBj_mRXVHCOKQB6We-WITw332tSjBMu7_BVsJxiUs4tE1EO3zyDwMwygB4WIh8AaEo6gPZZcTCl81Qy6PrClu7SxtC3TbzSz30XZlzOjZukAKbowWtBHiJ36lG-a4U_5dYeM6CKUfdb7MaXesg8oLlZscBYO4fVVKMdcjn0NvtsvF-RfOVtu8tVFiOw6yvb3Rt1g-2xPBcrCEEn69L2z59SnUHY8pboO84aP6YBHHPhMHXw1Quz5J7KfGN3qlcX3kehRg0RIISJKLCdu87PnMhtcbODE0T15xmjyc1mUYKmjlmwghgZF4m-UzFoP/https%3A%2F%2Ftwitter.com%2Fs_kariotis
> > >> >> >
> > >> >> > LinkedIn:
> >
> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >> >> > <
> > >> >>
> > >>
> >
> http://secure-web.cisco.com/1QlRJ-HwDhYoeQZGt2FCzKpzCEleTeJuBprI0G9qystL3HbJH4unSUkFhwBB5vlm1EWz9u50EG4S0Xnv38OXhu3-ioroUBcS0KG6x7V3cFf73lNR3mJnwnqVqzPtq9gIMtUxwnPPzS6sHVbJhDi2CyejXNt0HoO5oRi4T3Ruca3MN7ZxxXJd2gbyGVGryXBDFLrVBlg3KZ-3_m8AFoTvBpUvWv7fs0vGBQ2lWUXSoQ7JYARZ0vy5mW0a4kK2EzbxCWaOFLR6JcbDwA3T9BO006AtSM2onHVqveK_jx2VZB6CvZsLrR-VJ4j41A8IvYfuQ/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >> >> >
> > >> >> >
> > >> >> > This email message may contain legally privileged and/or
> > confidential
> > >> >> > information. If you are not the intended recipient(s), or the
> > >> employee
> > >> >> or
> > >> >> > agent responsible for the delivery of this message to the
> intended
> > >> >> > recipient(s), you are hereby notified that any disclosure,
> copying,
> > >> >> > distribution, or use of this email message is prohibited. If you
> > have
> > >> >> > received this message in error, please notify the sender
> > immediately
> > >> by
> > >> >> > e-mail and delete this email message from your computer. Thank
> you.
> > >> >> >
> > >> >>
> > >> >>
> > >> >> --
> > >> >> Cheers,
> > >> >> Sokratis Kariotis
> > >> >> PhD Student
> > >> >> University of Sheffield, Medical School
> > >> >> MedTech <
> >
> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
> > >President
> > >> >> Twitter: @s_kariotis <
> >
> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
> > >
> > >> >> LinkedIn:
> >
> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >> >>
> > >> >>         [[alternative HTML version deleted]]
> > >> >>
> > >> >> _______________________________________________
> > >> >> Bioc-devel using r-project.org mailing list
> > >> >>
> >
> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
> > >> >>
> > >> >
> > >>
> > >> --
> > >> Cheers,
> > >> Sokratis Kariotis
> > >> PhD Student
> > >> University of Sheffield, Medical School
> > >> MedTech <
> >
> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
> > >President
> > >> Twitter: @s_kariotis <
> >
> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
> > >
> > >> LinkedIn:
> >
> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
> > >>
> > >>         [[alternative HTML version deleted]]
> > >>
> > >> _______________________________________________
> > >> Bioc-devel using r-project.org mailing list
> > >>
> >
> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
> > >>
> > >
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> >
> >
> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
> >
> >
> > This email message may contain legally privileged and/or confidential
> > information. If you are not the intended recipient(s), or the employee or
> > agent responsible for the delivery of this message to the intended
> > recipient(s), you are hereby notified that any disclosure, copying,
> > distribution, or use of this email message is prohibited. If you have
> > received this message in error, please notify the sender immediately by
> > e-mail and delete this email message from your computer. Thank you.
> >
>
>
> --
> Cheers,
> Sokratis Kariotis
> PhD Student
> University of Sheffield, Medical School
> MedTech <https://www.facebook.com/medtechsheffield/>President
> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

	[[alternative HTML version deleted]]