[Bioc-devel] Omada package failing due to removed dependency

Thu Aug 10 08:53:05 CEST 2023

Hi,

All is green at
https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/

Regards,
Martin

On Thu, Aug 10, 2023 at 9:44 AM Sokratis Kariotis <
sokratiskariotis using gmail.com> wrote:

> Hey all,
>
> Is this fixed now? I think I can see all pass, but on the actual website
> its still on error. Thanks!
>
> Cheers,
> Sokratis
>
> On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <
> sokratiskariotis using gmail.com> wrote:
>
>> Hey,
>>
>> I believe I have resolved the conflicts and now can run: *git push
>> upstream main:devel*
>> with Everything up-to-date as a result. However, *git push origin main*
>> does not yield
>> anything and it keeps hanging without a message. I checked https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>> and the last commit is April.
>>
>>
>> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <
>> Lori.Shepherd using roswellpark.org> wrote:
>>
>>> You'll need to find the merge conflicts and resolve them. Recommit those
>>> files and then it should go.
>>>
>>> Lori Shepherd - Kern
>>>
>>> Bioconductor Core Team
>>>
>>> Roswell Park Comprehensive Cancer Center
>>>
>>> Department of Biostatistics & Bioinformatics
>>>
>>> Elm & Carlton Streets
>>>
>>> Buffalo, New York 14263
>>> ------------------------------
>>> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
>>> Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> *Sent:* Monday, July 31, 2023 7:27 AM
>>> *To:* Martin Grigorov <martin.grigorov using gmail.com>
>>> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>> dependency
>>>
>>> Tried but its Already up to date.
>>>
>>> On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, <martin.grigorov using gmail.com
>>> >
>>> wrote:
>>>
>>> > Hi Sokratis,
>>> >
>>> > You need to do "git pull --rebase" before trying to push.
>>> > Most probably the version has been bumped upstream.
>>> >
>>> > Regards,
>>> > Martin
>>> >
>>> > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <
>>> > sokratiskariotis using gmail.com> wrote:
>>> >
>>> >> Hey all,
>>> >>
>>> >> I created a new key and now I can commit etc but there is a conflict
>>> that
>>> >> is not allowing me to go ahead.
>>> >>
>>> >> My commands:
>>> >> git add .
>>> >> git commit -m "Update metrics"
>>> >> git push upstream main:devel
>>> >>
>>> >> *The above results in the following error:*
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >> *Enumerating objects: 19, done.Counting objects: 100% (17/17),
>>> done.Delta
>>> >> compression using up to 16 threadsCompressing objects: 100% (11/11),
>>> >> done.Writing objects: 100% (11/11), 4.78 KiB | 4.78 MiB/s, done.Total
>>> 11
>>> >> (delta 7), reused 0 (delta 0), pack-reused 0remote: Error: You cannot
>>> push
>>> >> without resolving merge conflicts.remote:remote: Please check the
>>> files in
>>> >> the commit pushed to the git-serverremote: for merge conflict markers
>>> like
>>> >> '<<<<<<<', '========', '>>>>>>>'.remote:To
>>> >> git.bioconductor.org:packages/omada ! [remote rejected] main -> devel
>>> >> (pre-receive hook declined)error: failed to push some refs to
>>> >> 'git.bioconductor.org:packages/omada'*
>>> >>
>>> >>
>>> >>
>>> >> On Mon, Jul 31, 2023 at 3:36 PM Mike Smith <grimbough using gmail.com>
>>> wrote:
>>> >>
>>> >> > Hi Sokratis,
>>> >> >
>>> >> > Everything in Bioconductor is built around the central Bioconductor
>>> git
>>> >> > repositories.  The only way to get changes out to users is to commit
>>> >> them
>>> >> > to git.bioconductor.org and then the build system will pick those
>>> up,
>>> >> run
>>> >> > the tests and checks, create new versions of packages, and make them
>>> >> > available for distribution.
>>> >> >
>>> >> > Perhaps you can include the git command you're running to submit the
>>> >> > changes and a copy of the exact error you're receiving.  That might
>>> help
>>> >> > the team suggest a solution.
>>> >> >
>>> >> > Best regards,
>>> >> > Mike
>>> >> >
>>> >> > On Fri, 28 Jul 2023 at 08:32, Sokratis Kariotis <
>>> >> > sokratiskariotis using gmail.com> wrote:
>>> >> >
>>> >> >> Hey both,
>>> >> >>
>>> >> >> I have edited the package code but I'm having some difficulties
>>> >> pushing it
>>> >> >> to trigger another build (github passphrase). Is there another way
>>> to
>>> >> >> trigger the build? Thanks!
>>> >> >>
>>> >> >> Cheers,
>>> >> >> Sokratis
>>> >> >>
>>> >> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
>>> >> Lori.Shepherd using roswellpark.org
>>> >> >> >
>>> >> >> wrote:
>>> >> >>
>>> >> >> > We can give you a little more time (a few weeks) to fix the
>>> package
>>> >> but
>>> >> >> > please fix as soon as possible to avoid deprecation.
>>> >> >> >
>>> >> >> > Cheers,
>>> >> >> >
>>> >> >> > Lori Shepherd - Kern
>>> >> >> >
>>> >> >> > Bioconductor Core Team
>>> >> >> >
>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >> >
>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >> >
>>> >> >> > Elm & Carlton Streets
>>> >> >> >
>>> >> >> > Buffalo, New York 14263
>>> >> >> > ------------------------------
>>> >> >> > *From:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >> > *Sent:* Monday, July 10, 2023 10:27 AM
>>> >> >> > *To:* Kern, Lori <Lori.Shepherd using RoswellPark.org>
>>> >> >> > *Cc:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>;
>>> >> >> > bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>> >> >> > dependency
>>> >> >> >
>>> >> >> > Hey both,
>>> >> >> >
>>> >> >> > I have checked the package license (GPL) and it should be fine
>>> to use
>>> >> >> the
>>> >> >> > code. However, I am having difficulty finding the actual code to
>>> >> >> calculate
>>> >> >> > the internal metrics I am using (used in Omada's function
>>> >> >> > cluster_voting.R). I can only find the wrapper function but not
>>> the
>>> >> ones
>>> >> >> > that actually calculate the metrics. I am not sure how to proceed
>>> >> with
>>> >> >> this
>>> >> >> > in time, so the Omada package won't get deprecated.
>>> >> >> >
>>> >> >> > Regards,
>>> >> >> > Sokratis
>>> >> >> >
>>> >> >> > On Fri, Jul 7, 2023 at 1:03 AM Kern, Lori <
>>> >> >> Lori.Shepherd using roswellpark.org>
>>> >> >> > wrote:
>>> >> >> >
>>> >> >> > We would not hunt down the lab especially for CRAN packages,
>>> but you
>>> >> >> > could reach out if you like.  That would probably be a
>>> recommended
>>> >> >> action
>>> >> >> > to either ask someone from their lab to maintain or if you are
>>> >> willing
>>> >> >> and
>>> >> >> > you really want the package around you could ask the lab if they
>>> mind
>>> >> >> you
>>> >> >> > volunteering to be the new maintainer.
>>> >> >> >
>>> >> >> > There could see two options for rewriting/maintaining.
>>> >> >> >
>>> >> >> > 1. Take over maintenance of the package and resubmit to CRAN
>>> >> >> > It's a little tricky cause this is a CRAN package so I'm not
>>> sure on
>>> >> >> their
>>> >> >> > exact policy of taking over an abandoned package. If this is
>>> >> desired,  I
>>> >> >> > would reach out to CRAN to find out their exact policy
>>> >> >> > 2. Move needed code to your Bioconductor package
>>> >> >> > You'll have to check the original package license to make sure
>>> this
>>> >> is
>>> >> >> > allowed under the license of the package. You will still want to
>>> give
>>> >> >> the
>>> >> >> > original authors/maintainer credit. I would say to be safe I
>>> would
>>> >> >> include
>>> >> >> > them as contributors/authors in the DESCRITPION Authors using R field
>>> and
>>> >> in
>>> >> >> > the R code I would add a comment above the code to reference
>>> original
>>> >> >> > package citation and stating it was copied from there.  I'm not a
>>> >> >> lawyer or
>>> >> >> > license/copy right expert so not sure if that would be good
>>> enough
>>> >> but
>>> >> >> that
>>> >> >> > would be my take on it.
>>> >> >> >
>>> >> >> > Lori Shepherd - Kern
>>> >> >> >
>>> >> >> > Bioconductor Core Team
>>> >> >> >
>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >> >
>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >> >
>>> >> >> > Elm & Carlton Streets
>>> >> >> >
>>> >> >> > Buffalo, New York 14263
>>> >> >> > ------------------------------
>>> >> >> > *From:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>>> >> >> > *Sent:* Thursday, July 6, 2023 1:58 AM
>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >> > *Cc:* Kern, Lori <Lori.Shepherd using RoswellPark.org>;
>>> >> >> bioc-devel using r-project.org
>>> >> >> > <bioc-devel using r-project.org>
>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>> >> >> > dependency
>>> >> >> >
>>> >> >> >
>>> https://secure-web.cisco.com/1EhksuB6k_yI--kj3_CN8LCovo7wAy9Epj-_8W4VV7FAbktome6nKnRrktDrrzsGXq6OrPZzxo7-CPAnrnZ4mFbi1Z-z81fIELFunE2pI8wuUlGU72f4Irnh1TjSXymZHtkM8_5OEv8EPAA1U7i6tUetGY5G8ZODgjnDQZaarKkEspvU92RNlxjLqzIKy-vIrX-TN-TtC-dDyaqOyIVUNZKJws7sU-V4VFjfkwoM5rK9BAdI4jIqcxygwdSeB5XsZftYZVy7nlTD1Rrp46lnGBMqvfBpVOQjd93wM9KQU1nafzbzIag4rrGGGlr_D4ZWB/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>> >> >> > <
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1pCvxIL3lfzw2yMAoq1pXQ5JiavYeyZHI2qtDauHw4xwZZBxaV-dAKGWcVKgwz09vF4YJJGVvkcQloDj0mJOUxj7BI3WPu_1Ze3vDW0a9syxuRsiQNOGsRkJ8BaWBdlxOdRBAw39KujDDGqb_DPfL6IsjHK5UCqoCpzw39GduVcBLFIutoPM8Nqjgp8ArDuh-oK-Bxe-huDYCoLXUX5GyU_fEG81AEtF-osCFtJNLRiQBggrsxcViF8mNihzVj8-UT4cNawHmz7xye_KNs45WZOxnVljiq5QQHuIGCeXRkbYBUvrpcEoTootlVxLloYK0/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>> >> >> >
>>> >> >> > That is, perhaps, not surprising...
>>> >> >> >
>>> >> >> > Package seems to be too good to be abandoned. I wonder if anyone
>>> from
>>> >> >> > their lab
>>> >> >> > <
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1IisY82Mh0-7_0tTgq7v7MgjvGFKIBucg15oqE_SNpUPzwuvYYaCPgz427Efo9Xga7j3PYM6msIsM8GJAK7ofsjmhrfAG3_kBGCmTdF0gVYBUz17CdZjNygLUpDMXPSt6h5CfKAjX_SrymhwTWvvEuyH1cH3nCYhVkVd5xfdd2W5azA0g9MJ4bPASnxJwY9quFxu_6CAIuYXkkO_DqiO9NC6Nb22USMev1V4qh5A3IX2kg6l60sRbM9gDQWjNwbJAPSnWq9G5setIw9CNP8avnjON5nhm_cjNhhn6s6kY07wwiSQ4sSQqsekskzOjhbm1/https%3A%2F%2Fmodalx.parisnanterre.fr%2Fmembres
>>> >> >> >
>>> >> >> > could take over maintenance, if you still bother to ask...
>>> >> >> >
>>> >> >> > Best,
>>> >> >> > Oleksii
>>> >> >> >
>>> >> >> > On Thu, 6 Jul 2023 at 06:23, Sokratis Kariotis <
>>> >> >> sokratiskariotis using gmail.com>
>>> >> >> > wrote:
>>> >> >> >
>>> >> >> > Hey,
>>> >> >> >
>>> >> >> > I haven't received any responses from the maintainer of
>>> ClusterCrit
>>> >> so I
>>> >> >> > guess I will have to re-write the code used. How can I properly
>>> go
>>> >> about
>>> >> >> > this and credit the authors as well? Thanks!
>>> >> >> >
>>> >> >> > Cheers,
>>> >> >> > Sokratis
>>> >> >> >
>>> >> >> > On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <
>>> >> >> Lori.Shepherd using roswellpark.org>
>>> >> >> > wrote:
>>> >> >> >
>>> >> >> > We do not allow archived packages to be used.  All dependencies
>>> must
>>> >> be
>>> >> >> on
>>> >> >> > CRAN or Bioconductor. So yes if you can get them to reinstate the
>>> >> >> package
>>> >> >> > on CRAN that would be ideal.  If not you will have to remove the
>>> >> package
>>> >> >> > from the dependency list and either re-write the code used
>>> (giving
>>> >> >> original
>>> >> >> > clusterCrit authors credit) or remove the functionality used from
>>> >> that
>>> >> >> > package.
>>> >> >> >
>>> >> >> > Lori Shepherd - Kern
>>> >> >> >
>>> >> >> > Bioconductor Core Team
>>> >> >> >
>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >> >
>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >> >
>>> >> >> > Elm & Carlton Streets
>>> >> >> >
>>> >> >> > Buffalo, New York 14263
>>> >> >> > ------------------------------
>>> >> >> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf
>>> of
>>> >> >> > Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>>> >> >> > *Sent:* Thursday, June 29, 2023 5:36 AM
>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >> > *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>> >> >> > dependency
>>> >> >> >
>>> >> >> > Hi,
>>> >> >> > in this case maybe it's worth reaching out to the maintainer of
>>> >> >> > clusterCrit. It was removed from CRAN because of (seems-to-be)
>>> minor
>>> >> >> > warnings, which can be addressed by the clusterCrit developer in
>>> no
>>> >> >> time...
>>> >> >> >
>>> >> >> > Best,
>>> >> >> > Oleksii
>>> >> >> >
>>> >> >> > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
>>> >> >> > sokratiskariotis using gmail.com>
>>> >> >> > wrote:
>>> >> >> >
>>> >> >> > > Dear Bioconductor team,
>>> >> >> > >
>>> >> >> > > I received an email that my package "Omada" is failing in
>>> release
>>> >> and
>>> >> >> > > devel. I had a look and the problem seems to be: *ERROR:
>>> dependency
>>> >> >> > > ‘clusterCrit’ is not available for package ‘omada’*. So the
>>> package
>>> >> >> > > clusterCrit was removed. Is there a way I can use a archived
>>> >> version
>>> >> >> of
>>> >> >> > it
>>> >> >> > > (or something similar) so I don't have to rewrite code based
>>> on new
>>> >> >> > > packages to avoid potentially inconsistencies? Please advise,
>>> thank
>>> >> >> you!
>>> >> >> > >
>>> >> >> > > Cheers,
>>> >> >> > > Dr. Sokratis Kariotis (PhD)
>>> >> >> > > Agency for Science, Technology and Research (A*STAR)
>>> >> >> > > Singapore Immunology Network (SIgN)
>>> >> >> > > Twitter: @s_kariotis <
>>> >> >> >
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >> > >
>>> >> >> > > LinkedIn:
>>> >> >> >
>>> >> >>
>>> >>
>>> http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >> > >
>>> >> >> > >         [[alternative HTML version deleted]]
>>> >> >> > >
>>> >> >> > > _______________________________________________
>>> >> >> > > Bioc-devel using r-project.org mailing list
>>> >> >> > >
>>> >> >> >
>>> >> >>
>>> >>
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>>> >> >> > >
>>> >> >> >
>>> >> >> >         [[alternative HTML version deleted]]
>>> >> >> >
>>> >> >> > _______________________________________________
>>> >> >> > Bioc-devel using r-project.org mailing list
>>> >> >> >
>>> >> >> >
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
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>>> >> >> >
>>> >> >> > This email message may contain legally privileged and/or
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>>> >> >> > agent responsible for the delivery of this message to the
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>>> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >> > --
>>> >> >> > Cheers,
>>> >> >> > Sokratis Kariotis
>>> >> >> > PhD Student
>>> >> >> > University of Sheffield, Medical School
>>> >> >> > MedTech
>>> >> >> > <
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1j_t_6XlNHmK_Mlrd4WRabc9QOpzT2OGES5vH7ZXf-zkhvpeT6fGj6r1c6HMwcYrnxIzGZ6HwikAhhXIh8OkaEgWqigSPXAd_m0NPSjZf7cr7xi4b003k8sYSFAOfwcStP8WCMJQEHURgiHkNDvUmrUdfJYydQO9lMNOyfaP6SnxI2mQX21fOBWIj5wlIAVh9_pBFujbt_XfCBhHL495EtB_s0ntbiowBalE7bhEa4FullCdFTSex4VfICmSriWx91cSPmk1TzmAHv6KZtr7XqAgLH4OzGlGEUTMdjmcrYOoLTC5XpKAljIZMsCwu8hDP/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >> >
>>> >> >> > President
>>> >> >> > Twitter: @s_kariotis
>>> >> >> > <
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/13IN8xWDrADy-iyp1mknOrX5y2tJixhXPBcywL3EoIE7tOUCkSYs7hbAy2slZfzwMH3Bq9AnScXs3HK_KnDOO2kihBQdfM9nIHxnoa1vAkVFfYH8L_ns7w9KGqC0pzUOOxThE_ZMGVWk1LyQyf-RPrv_HY7RqQZo1IEYNirDTKWBu2lkLCH8qvs8lRMm79wx5eRwdZVYNH0uq7g7EcP_vvK9d8vQ534dzt0hOgHaDByQVi2reoXzwifR0pOYP-6LhdI15nbDtZHxMBmTvueysM77gfHBn7_IUHK6y9-biSIidTmH3GlJMkhk83x7UR5Jk/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >> >
>>> >> >> > LinkedIn:
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >> > <
>>> >> >>
>>> >>
>>> http://secure-web.cisco.com/1h1oCsLmDI6MQdDDyPKrhabJrDBtBogVZA8wMdTLiZENtCtnsB9UQqak12XHMegX9sP0mimjSxawrR5u0VlKLv-D4lrX8u8A05PST1zfXM9VJX6E41Hj2-TOTZm9uOWc8hfxBrCT6UPjQ0X5pFh0sQRgC5tqu2Ks1EALVXZvSixGddS_zQ2C0bQhnc9KLJe8J3jtxPOkUz7QqCjcwpfgixL9ls_ysxmn2OGFxfiMwTmWgUXWcfWwvOXy6OhfeAl_IDK9USdONEsQETuVSgt7f2eVi5DJJBy_4eVwIVz3GV6iTGr2VjRBlh98HxZMAr-iP/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
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>>> >> >> >
>>> >> >> >
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>>> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >> > --
>>> >> >> > Cheers,
>>> >> >> > Sokratis Kariotis
>>> >> >> > PhD Student
>>> >> >> > University of Sheffield, Medical School
>>> >> >> > MedTech
>>> >> >> > <
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1EbU56JtxgdwdoJoUZSkRfzViaYzT5UpVv7Wn4bHXpw7_iNUn_et52ACzsUWbzs2Du309DRo4wtQgGcVuDWVIPx5vtUsOovTfb6A-HIBq3NSje0v9lBELQCeYZvBzjm0t2kAdce_aXnf8m3mH7-cYUd0C6Wu2R7erAmQwuoI22clJuDcztgq-JhMyIczKcN_UhCUNAzJ-b_kHKI3mxzoO76dg0N8g2MIp_pHBC3x0rVQno00wElfOCtr3poLLQZwpcZCTPoAQmYs-Dfin4Lwoy2-B9Qn5txtHoCygaeneDxgiTHVOAuILij26i2Q9cgAQ/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >> >
>>> >> >> > President
>>> >> >> > Twitter: @s_kariotis
>>> >> >> > <
>>> >> >>
>>> >>
>>> https://secure-web.cisco.com/1RhhMUBj_mRXVHCOKQB6We-WITw332tSjBMu7_BVsJxiUs4tE1EO3zyDwMwygB4WIh8AaEo6gPZZcTCl81Qy6PrClu7SxtC3TbzSz30XZlzOjZukAKbowWtBHiJ36lG-a4U_5dYeM6CKUfdb7MaXesg8oLlZscBYO4fVVKMdcjn0NvtsvF-RfOVtu8tVFiOw6yvb3Rt1g-2xPBcrCEEn69L2z59SnUHY8pboO84aP6YBHHPhMHXw1Quz5J7KfGN3qlcX3kehRg0RIISJKLCdu87PnMhtcbODE0T15xmjyc1mUYKmjlmwghgZF4m-UzFoP/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >> >
>>> >> >> > LinkedIn:
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >> > <
>>> >> >>
>>> >>
>>> http://secure-web.cisco.com/1QlRJ-HwDhYoeQZGt2FCzKpzCEleTeJuBprI0G9qystL3HbJH4unSUkFhwBB5vlm1EWz9u50EG4S0Xnv38OXhu3-ioroUBcS0KG6x7V3cFf73lNR3mJnwnqVqzPtq9gIMtUxwnPPzS6sHVbJhDi2CyejXNt0HoO5oRi4T3Ruca3MN7ZxxXJd2gbyGVGryXBDFLrVBlg3KZ-3_m8AFoTvBpUvWv7fs0vGBQ2lWUXSoQ7JYARZ0vy5mW0a4kK2EzbxCWaOFLR6JcbDwA3T9BO006AtSM2onHVqveK_jx2VZB6CvZsLrR-VJ4j41A8IvYfuQ/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >> >
>>> >> >> >
>>> >> >> > This email message may contain legally privileged and/or
>>> confidential
>>> >> >> > information. If you are not the intended recipient(s), or the
>>> >> employee
>>> >> >> or
>>> >> >> > agent responsible for the delivery of this message to the
>>> intended
>>> >> >> > recipient(s), you are hereby notified that any disclosure,
>>> copying,
>>> >> >> > distribution, or use of this email message is prohibited. If you
>>> have
>>> >> >> > received this message in error, please notify the sender
>>> immediately
>>> >> by
>>> >> >> > e-mail and delete this email message from your computer. Thank
>>> you.
>>> >> >> >
>>> >> >>
>>> >> >>
>>> >> >> --
>>> >> >> Cheers,
>>> >> >> Sokratis Kariotis
>>> >> >> PhD Student
>>> >> >> University of Sheffield, Medical School
>>> >> >> MedTech <
>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >President
>>> >> >> Twitter: @s_kariotis <
>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >
>>> >> >> LinkedIn:
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>
>>> >> >>         [[alternative HTML version deleted]]
>>> >> >>
>>> >> >> _______________________________________________
>>> >> >> Bioc-devel using r-project.org mailing list
>>> >> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>
>>> >> >
>>> >>
>>> >> --
>>> >> Cheers,
>>> >> Sokratis Kariotis
>>> >> PhD Student
>>> >> University of Sheffield, Medical School
>>> >> MedTech <
>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >President
>>> >> Twitter: @s_kariotis <
>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >
>>> >> LinkedIn:
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >>
>>> >>         [[alternative HTML version deleted]]
>>> >>
>>> >> _______________________________________________
>>> >> Bioc-devel using r-project.org mailing list
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >>
>>> >
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel using r-project.org mailing list
>>>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>
>>>
>>> This email message may contain legally privileged and/or confidential
>>> information. If you are not the intended recipient(s), or the employee or
>>> agent responsible for the delivery of this message to the intended
>>> recipient(s), you are hereby notified that any disclosure, copying,
>>> distribution, or use of this email message is prohibited. If you have
>>> received this message in error, please notify the sender immediately by
>>> e-mail and delete this email message from your computer. Thank you.
>>>
>>
>>
>> --
>> Cheers,
>> Sokratis Kariotis
>> PhD Student
>> University of Sheffield, Medical School
>> MedTech <https://www.facebook.com/medtechsheffield/>President
>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>
>
>
> --
> Cheers,
> Sokratis Kariotis
> PhD Student
> University of Sheffield, Medical School
> MedTech <https://www.facebook.com/medtechsheffield/>President
> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>

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