[Bioc-devel] Rebuilding package

[Lyla Atta]

Hi Sean,

Thanks for your response. Apologies, I meant to specify that I pushed to the bioconductor git.

Thanks!
Lyla



On Sep 2, 2022, at 5:16 PM, Sean Davis <seandavi using gmail.com> wrote:



      External Email - Use Caution


Hi, Lyla.

Bioconductor builds don’t use Github, so in addition to pushing changes to Github, you’ll need to make any changes and then push them to the Bioconductor git repository. There are some git scenarios documented including this one.

https://contributions.bioconductor.org/git-version-control.html#bug-fix-in-release-and-devel<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23bug-fix-in-release-and-devel&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615201031%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=aGJ%2FT2u67h%2BZQRQr4qSkDAN%2F30RRDJo6IF7OziuQR%2FY%3D&reserved=0>

I hope that helps.

Sean


From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Lyla Atta via Bioc-devel <bioc-devel using r-project.org>
Date: Friday, September 2, 2022 at 2:56 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Rebuilding package
Hello,

I received a notification that my package (veloviz) is failing to build on the new release. I made the appropriate changes and pushed to github with a version bump. I am still receiving the error and when checking the build results (linked below), it seems like my updates didn't trigger a rebuild with the package changes.

https://master.bioconductor.org/checkResults/3.15/bioc-LATEST/veloviz/nebbiolo1-buildsrc.html<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.15%2Fbioc-LATEST%2Fveloviz%2Fnebbiolo1-buildsrc.html&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615201031%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=vCIc4%2FCkstwojZDz9ZPnKT1TYAiBs03wTeDmhF2ybNc%3D&reserved=0>

Do you have any insights on how to proceed?

Thanks!

Lyla

---
Lyla Atta
MD-PhD Candidate at jef.works<https://jef.works/<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fjef.works%2F&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615357266%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=UygP29GiQstTBmOFiDUm8zpFw90tpEP3vnGGAwalXrY%3D&reserved=0>>
Department of Biomedical Engineering
Johns Hopkins University School of Medicine
lylaatta.github.io<https://lylaatta.github.io/<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Flylaatta.github.io%2F&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615357266%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=T%2BcgyPnJ8KmN5dWn61Sz26FmI4C0wvfSBp979ES9sgM%3D&reserved=0>>

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