[Bioc-devel] Rebuilding package

[Vincent Carey]

Hi, you are citing an error on the 3.15 build.  You pushed a change to
master branch.  You need to

git checkout RELEASE_3_15

make your changes

then commit and push.  attend to the branch you are using when making
further changes

best regards


On Fri, Sep 2, 2022 at 5:23 PM Lyla Atta via Bioc-devel
<bioc-devel using r-project.org> wrote:
>
> Hi Sean,
>
> Thanks for your response. Apologies, I meant to specify that I pushed to the bioconductor git.
>
> Thanks!
> Lyla
>
>
>
> On Sep 2, 2022, at 5:16 PM, Sean Davis <seandavi using gmail.com> wrote:
>
> 
>
>       External Email - Use Caution
>
>
> Hi, Lyla.
>
> Bioconductor builds don’t use Github, so in addition to pushing changes to Github, you’ll need to make any changes and then push them to the Bioconductor git repository. There are some git scenarios documented including this one.
>
> https://contributions.bioconductor.org/git-version-control.html#bug-fix-in-release-and-devel<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23bug-fix-in-release-and-devel&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615201031%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=aGJ%2FT2u67h%2BZQRQr4qSkDAN%2F30RRDJo6IF7OziuQR%2FY%3D&reserved=0>
>
> I hope that helps.
>
> Sean
>
>
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Lyla Atta via Bioc-devel <bioc-devel using r-project.org>
> Date: Friday, September 2, 2022 at 2:56 PM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] Rebuilding package
> Hello,
>
> I received a notification that my package (veloviz) is failing to build on the new release. I made the appropriate changes and pushed to github with a version bump. I am still receiving the error and when checking the build results (linked below), it seems like my updates didn't trigger a rebuild with the package changes.
>
> https://master.bioconductor.org/checkResults/3.15/bioc-LATEST/veloviz/nebbiolo1-buildsrc.html<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.15%2Fbioc-LATEST%2Fveloviz%2Fnebbiolo1-buildsrc.html&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615201031%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=vCIc4%2FCkstwojZDz9ZPnKT1TYAiBs03wTeDmhF2ybNc%3D&reserved=0>
>
> Do you have any insights on how to proceed?
>
> Thanks!
>
> Lyla
>
> ---
> Lyla Atta
> MD-PhD Candidate at jef.works<https://jef.works/<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fjef.works%2F&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615357266%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=UygP29GiQstTBmOFiDUm8zpFw90tpEP3vnGGAwalXrY%3D&reserved=0>>
> Department of Biomedical Engineering
> Johns Hopkins University School of Medicine
> lylaatta.github.io<https://lylaatta.github.io/<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Flylaatta.github.io%2F&data=05%7C01%7Clylaatta%40jhmi.edu%7C971b9833f70e41ef1aa408da8d280c0c%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637977501615357266%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=T%2BcgyPnJ8KmN5dWn61Sz26FmI4C0wvfSBp979ES9sgM%3D&reserved=0>>
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