[Bioc-devel] EXTERNAL: Interpreting BiocCheck output

[Marcel Ramos]

Hi Giulia,

Are you using a recent version of BiocCheck?

If so, check the bottom of the BiocCheck::BiocCheck():

---
See the <packageName>.BiocCheck folder and run
     browseVignettes(package = 'BiocCheck')
for details.
---

Can you provide more details, e.g., the repository of the package?

Thanks.

Best regards,

Marcel

On 10/4/22 4:44 AM, Giulia Pais wrote:
> Hello,
> I�m having some issues in interpreting BiocCheck outputs, maybe someone can tell me how to fix the issues.
>
> I�ve got 2 main issues that cause the check to fail after normal CRAN check has passed:
>
>    1.  I get this error message
>
> * Checking if other packages can import this one...
>
>      * ERROR: Packages providing 2 object(s) used in this package should be imported in the NAMESPACE file, otherwise packages importing
>
>        this package may fail.
>
>
>
> However it is nowhere mentioned which packages they are and where those objects are instantiated so I have no clue how to solve this one
>
>    1.  Since previous version of the package, which built and passed checks without issues, I�ve been using a custom *.Rmd file placed in inst/rmd in the vignette to recycle the same chunk of code and optimizing time in phase of update (I update info only once instead of 4 times). Even if the package passes CRAN checks, BiocCheck errors telling me it can�t find this Rmd file and therefore can�t evaluate the chunk where it is mentioned. Any suggestion on this?
>
> Thanks in advance
> Giulia
>
> 	[[alternative HTML version deleted]]
>
>
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