[Bioc-devel] Un-deprecate fastseg package

Mon May 23 13:35:36 CEST 2022

Great, Thank you!! 

Best
Alex

> On 23. May 2022, at 13:33, Kern, Lori <Lori.Shepherd using RoswellPark.org> wrote:
> 
> The package has been undeprecated.  Thank you for taking over maintainence 
> 
> Cheers, 
> 
> Lori Shepherd - Kern
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Alexander Blume <alex.gos90 using gmail.com>
> Sent: Tuesday, May 17, 2022 1:43 PM
> To: maintainer using bioconductor.org <maintainer using bioconductor.org>
> Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: Un-deprecate fastseg package
>  
> Hello, 
> 
> I took over the maintenance of the `fastseg` package and would like to request un-deprecation of the fastseg package. 
> 
> Best
> Alexander Blume
> 
> 
>> Begin forwarded message:
>> 
>> From: Nitesh Turaga <nturaga.bioc using gmail.com <mailto:nturaga.bioc using gmail.com>>
>> Subject: Re: fastseg Bioconductor package
>> Date: 17. May 2022 at 19:26:53 CEST
>> To: Alexander Blume <alex.gos90 using gmail.com <mailto:alex.gos90 using gmail.com>>
>> Cc: fastseg using bioinf.jku.at <mailto:fastseg using bioinf.jku.at>, Günter Klambauer <klambauer using ml.jku.at <mailto:klambauer using ml.jku.at>>
>> 
>> Please email the mailing list now,  bioc-devel using r-project.org <mailto:bioc-devel using r-project.org>.
>> 
>> This request will be handled most likely next week by Lori Shepherd. 
>> 
>> Nitesh Turaga
>> Scientist II, Department of Data Science,
>> Bioconductor Core Team Member
>> Dana Farber Cancer Institute
>> 
>>> On May 17, 2022, at 1:23 PM, Alexander Blume <alex.gos90 using gmail.com <mailto:alex.gos90 using gmail.com>> wrote:
>>> 
>>> Dear Nitesh,
>>> 
>>> I set myself as the new maintainer and would like to un-deprecate the fastseg package. 
>>> 
>>> Best
>>> Alex
>>> 
>>> 
>>> 
>>>> On 17. May 2022, at 18:31, Alexander Blume <alex.gos90 using gmail.com <mailto:alex.gos90 using gmail.com>> wrote:
>>>> 
>>>> Hi Günter,
>>>> 
>>>> Thanks for this smooth transition. 
>>>> 
>>>> In terms of changes to the DESCRIPTION file, I can just put myself as the new maintainer. 
>>>> 
>>>> However, I was wondering if you are planning to keep the linked website alive for the near future? 
>>>> If yes, I would also update the respective link to http://www.bioinf.jku.at/software/fastseg/index.html <http://secure-web.cisco.com/160Lj03HATMCmYgaVOszDqLl1dPOovZGynYQr4HvFpMw1pGx0ylTjPTaClFu_o_TSTNhldd4_MDEmo28L4ef38p8WFydM3h0ftR4_siWntFN1USg3j93Kx0c6L5LWvOAOByjOUniOWW-EQrqLNbTh6QDqhADzr79r0JnXzLD-51xIb_p6Bsx4HcJRRsuZf6es_YpJQBHcV8JBGZ8Fo0B6_gD-T4BDnaqob_gHgUAfNcUCr7iNcQWiOma6WmXoA1nanWb-4uHxgDMhDeQDNZfGvWxJx3EVDdo-vbf8JTsGzB4UVn3pq_Ak6QAph4M00jD53laRaFicRZiTpIFZ8D-8og/http%3A%2F%2Fwww.bioinf.jku.at%2Fsoftware%2Ffastseg%2Findex.html> .
>>>> 
>>>> Best
>>>> Alex
>>>> 
>>>>> On 17. May 2022, at 18:14, Nitesh Turaga <nturaga.bioc using gmail.com <mailto:nturaga.bioc using gmail.com>> wrote:
>>>>> 
>>>>> You can also do
>>>>> 
>>>>> ssh -T git using git.bioconductor.org <mailto:git using git.bioconductor.org> | grep ‘fastseg’
>>>>> 
>>>>> You should see R W (read and write)
>>>>> 
>>>>> Nitesh Turaga
>>>>> Scientist II, Department of Data Science,
>>>>> Bioconductor Core Team Member
>>>>> Dana Farber Cancer Institute
>>>>> 
>>>>>> On May 17, 2022, at 12:08 PM, Alexander Blume <alex.gos90 using gmail.com <mailto:alex.gos90 using gmail.com>> wrote:
>>>>>> 
>>>>>> Dear Nitesh, 
>>>>>> 
>>>>>> How exactly should I check my access to the fastseg package? 
>>>>>> 
>>>>>> FYI, I am able to fetch the repo using `git clone git using git.bioconductor.org <mailto:git using git.bioconductor.org>:packages/fastseg`. 
>>>>>> 
>>>>>> Best
>>>>>> Alex
>>>>>> 
>>>>>> 
>>>>>>> On 17. May 2022, at 17:57, Nitesh Turaga <nturaga.bioc using gmail.com <mailto:nturaga.bioc using gmail.com>> wrote:
>>>>>>> 
>>>>>>> Hi Günter,
>>>>>>> 
>>>>>>> I’ve added Alexander (BiocCredentials id: a.gosdschan) to the package.
>>>>>>> 
>>>>>>> Please ask him to check if he can access the package.
>>>>>>> 
>>>>>>> You would also need to change the maintainer on the DESCRIPTION file of the package.
>>>>>>> 
>>>>>>> Best
>>>>>>> 
>>>>>>> Nitesh 
>>>>>>> 
>>>>>>> 
>>>>>>> Nitesh Turaga
>>>>>>> Scientist II, Department of Data Science,
>>>>>>> Bioconductor Core Team Member
>>>>>>> Dana Farber Cancer Institute
>>>>>>> 
>>>>>>>> On May 17, 2022, at 6:18 AM, Günter Klambauer <klambauer using ml.jku.at <mailto:klambauer using ml.jku.at>> wrote:
>>>>>>>> 
>>>>>>>> Dear Bioconductor team, dear Nithesh,
>>>>>>>> 
>>>>>>>> I would like to hand over maintenance of the package "fastseg" to Alexander Blume (CC). Is this possible? What do we need? (i've done this before with cn.mops which was handed over to one of my colleagues). 
>>>>>>>> 
>>>>>>>> Best,
>>>>>>>> Günter
>>>>>>>> 
>>>>>>>> 
>>>>>>>> On 25.03.22 18:58, nturaga.bioc using gmail.com <mailto:nturaga.bioc using gmail.com> wrote:
>>>>>>>>> fastseg Bioconductor Package Notification
>>>>>>>>> 
>>>>>>>>> Nitesh Turaga1
>>>>>>>>> 
>>>>>>>>> 1Dana Farber Cancer Institute, Boston, MA, USA
>>>>>>>>> 
>>>>>>>>> March 25, 2022
>>>>>>>>> 
>>>>>>>>> Package: fastseg
>>>>>>>>> 
>>>>>>>>> Hi Guenter Klambauer,
>>>>>>>>> 
>>>>>>>>> I am contacting you concerning the fastseg package, on the release and devel branch of Bioconductor, for which you are listed as the maintainer.
>>>>>>>>> 
>>>>>>>>> The latest build/check report shows that your package is failing on one or more platforms. Please resolve the issues before the next Bioconductor release for your package’s continued inclusion in Bioconductor.
>>>>>>>>> 
>>>>>>>>> https://bioconductor.org/checkResults/release/bioc-LATEST/fastseg/https://bioconductor.org/checkResults/devel/bioc-LATEST/fastseg/ <https://secure-web.cisco.com/1MKkLr3yYO0FHnx84LWnBos_c1gJvfdzS6Ki24MxAfJCOGbVlUG_dGPWn7geQtWRCHuMLOhBgOLLTq6QWN-iNmeMFwOvzc5716QKwu_iwixy7lSLBnqM4-BMfBy2U7K_aNEYXhQKtcLQlwzZcXmpL_Lw8H_4lch3t1L6OC1Kl_ivRrDg4nBXgO6pE4rHg5vsCGB_DSyiTCpQptdELvwwGqyfhqoz11gYM1K3iFRdnXf9-hD7qJN8uoxr8G2AsI4eaNqNL3HlpUCwp1usAyEbZ1n-KTux5TteqDNZkvpDEB7w3OhpQRBYfts66BrUWWPnx/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2Ffastseg%2Fhttps%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Ffastseg%2F>
>>>>>>>>> 
>>>>>>>>> Please let me know if you have any questions.
>>>>>>>>> 
>>>>>>>>> Regards,
>>>>>>>>> 
>>>>>>>>> Nitesh
>>>>>>>>> 
>>>>>>>>> Bioconductor Core Team 
>>>>>>>>> Scientist II 
>>>>>>>>> Dana Farber Cancer Institute 
>>>>>>>>> Data Science 
>>>>>>>>> Boston, MA
>>>>>>>> 
>>>>>>>> 
>>>>>>>> -- 
>>>>>>>> Günter Klambauer, PhD
>>>>>>>> Assistant professor for Artificial Intelligence in Life Sciences
>>>>>>>> ELLIS scholar (
>>>>>>>> ellis.eu <http://secure-web.cisco.com/1IoFIyFKSNCtyUVLbzAu0-X9DLdm5PWsTHlrSjbLCS6dLvrARUhq5_pnV0HxGcJPyPVgin0j5R8KbVdq5oUghO8lbJrreO62eWTumI_k2kFzRUq95kzEIfABOQf8erW49V_GnEMDvFcXwq4xbgJ7tWVmsazFTGjt_SsJ4Yx8hhLPDpUuRSyOUFUrU3SGs1KVFII1d8iFAH_B7RVqBTLake7gEH4LTsuKP_jsu1BaIDn7SS3Vh87pcLqrEctuRy1ETMFtGSboJx0svdIKZPlwdMPnGQQIYTIF3wSp0NJfJwCBn12nFh57CIY_QkbZOHRl0/http%3A%2F%2Fellis.eu>
>>>>>>>> )
>>>>>>>> Head of department "Machine Learning" at the Austrian Society for Artificial Intelligence (ASAI)
>>>>>>>> LIT AI Lab & Institute for Machine Learning
>>>>>>>> Johannes Kepler University, Linz, Austria
>>>>>>>> 
>>>>>>>> https://www.jku.at/en/institute-for-machine-learning/about-us/team/assist-prof-mag-dr-guenter-klambauer
>>>>>>> 
>>>>>> 
>>>>> 
>>>> 
>>> 
>> 
> 
> 
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