[Bioc-devel] Un-deprecate fastseg package

Mon May 23 13:33:00 CEST 2022

The package has been undeprecated.  Thank you for taking over maintainence

Cheers,

Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Alexander Blume <alex.gos90 using gmail.com>
Sent: Tuesday, May 17, 2022 1:43 PM
To: maintainer using bioconductor.org <maintainer using bioconductor.org>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Un-deprecate fastseg package

Hello,

I took over the maintenance of the `fastseg` package and would like to request un-deprecation of the fastseg package.

Best
Alexander Blume

Begin forwarded message:

From: Nitesh Turaga <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>>
Subject: Re: fastseg Bioconductor package
Date: 17. May 2022 at 19:26:53 CEST
To: Alexander Blume <alex.gos90 using gmail.com<mailto:alex.gos90 using gmail.com>>
Cc: fastseg using bioinf.jku.at<mailto:fastseg using bioinf.jku.at>, G�nter Klambauer <klambauer using ml.jku.at<mailto:klambauer using ml.jku.at>>

Please email the mailing list now,  bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>.

This request will be handled most likely next week by Lori Shepherd.

Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute

On May 17, 2022, at 1:23 PM, Alexander Blume <alex.gos90 using gmail.com<mailto:alex.gos90 using gmail.com>> wrote:

Dear Nitesh,

I set myself as the new maintainer and would like to un-deprecate the fastseg package.

Best
Alex

On 17. May 2022, at 18:31, Alexander Blume <alex.gos90 using gmail.com<mailto:alex.gos90 using gmail.com>> wrote:

Hi G�nter,

Thanks for this smooth transition.

In terms of changes to the DESCRIPTION file, I can just put myself as the new maintainer.

However, I was wondering if you are planning to keep the linked website alive for the near future?
If yes, I would also update the respective link to http://www.bioinf.jku.at/software/fastseg/index.html<http://secure-web.cisco.com/160Lj03HATMCmYgaVOszDqLl1dPOovZGynYQr4HvFpMw1pGx0ylTjPTaClFu_o_TSTNhldd4_MDEmo28L4ef38p8WFydM3h0ftR4_siWntFN1USg3j93Kx0c6L5LWvOAOByjOUniOWW-EQrqLNbTh6QDqhADzr79r0JnXzLD-51xIb_p6Bsx4HcJRRsuZf6es_YpJQBHcV8JBGZ8Fo0B6_gD-T4BDnaqob_gHgUAfNcUCr7iNcQWiOma6WmXoA1nanWb-4uHxgDMhDeQDNZfGvWxJx3EVDdo-vbf8JTsGzB4UVn3pq_Ak6QAph4M00jD53laRaFicRZiTpIFZ8D-8og/http%3A%2F%2Fwww.bioinf.jku.at%2Fsoftware%2Ffastseg%2Findex.html> .

Best
Alex

On 17. May 2022, at 18:14, Nitesh Turaga <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>> wrote:

You can also do

ssh -T git using git.bioconductor.org<mailto:git using git.bioconductor.org> | grep �fastseg�

You should see R W (read and write)

Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute

On May 17, 2022, at 12:08 PM, Alexander Blume <alex.gos90 using gmail.com<mailto:alex.gos90 using gmail.com>> wrote:

Dear Nitesh,

How exactly should I check my access to the fastseg package?

FYI, I am able to fetch the repo using `git clone git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/fastseg`.

Best
Alex

On 17. May 2022, at 17:57, Nitesh Turaga <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>> wrote:

Hi G�nter,

I�ve added Alexander (BiocCredentials id: a.gosdschan) to the package.

Please ask him to check if he can access the package.

You would also need to change the maintainer on the DESCRIPTION file of the package.

Best

Nitesh

Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute

On May 17, 2022, at 6:18 AM, G�nter Klambauer <klambauer using ml.jku.at<mailto:klambauer using ml.jku.at>> wrote:

Dear Bioconductor team, dear Nithesh,

I would like to hand over maintenance of the package "fastseg" to Alexander Blume (CC). Is this possible? What do we need? (i've done this before with cn.mops which was handed over to one of my colleagues).

Best,
G�nter

On 25.03.22 18:58, nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com> wrote:
fastseg Bioconductor Package Notification

Nitesh Turaga1

1Dana Farber Cancer Institute, Boston, MA, USA

March 25, 2022

Package: fastseg

Hi Guenter Klambauer,

I am contacting you concerning the fastseg package, on the release and devel branch of Bioconductor, for which you are listed as the maintainer.

The latest build/check report shows that your package is failing on one or more platforms. Please resolve the issues before the next Bioconductor release for your package�s continued inclusion in Bioconductor.

https://bioconductor.org/checkResults/release/bioc-LATEST/fastseg/https://bioconductor.org/checkResults/devel/bioc-LATEST/fastseg/<https://secure-web.cisco.com/1MKkLr3yYO0FHnx84LWnBos_c1gJvfdzS6Ki24MxAfJCOGbVlUG_dGPWn7geQtWRCHuMLOhBgOLLTq6QWN-iNmeMFwOvzc5716QKwu_iwixy7lSLBnqM4-BMfBy2U7K_aNEYXhQKtcLQlwzZcXmpL_Lw8H_4lch3t1L6OC1Kl_ivRrDg4nBXgO6pE4rHg5vsCGB_DSyiTCpQptdELvwwGqyfhqoz11gYM1K3iFRdnXf9-hD7qJN8uoxr8G2AsI4eaNqNL3HlpUCwp1usAyEbZ1n-KTux5TteqDNZkvpDEB7w3OhpQRBYfts66BrUWWPnx/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2Ffastseg%2Fhttps%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Ffastseg%2F>

Please let me know if you have any questions.

Regards,

Nitesh

Bioconductor Core Team
Scientist II
Dana Farber Cancer Institute
Data Science
Boston, MA

--
G�nter Klambauer, PhD
Assistant professor for Artificial Intelligence in Life Sciences
ELLIS scholar (
ellis.eu<http://secure-web.cisco.com/1IoFIyFKSNCtyUVLbzAu0-X9DLdm5PWsTHlrSjbLCS6dLvrARUhq5_pnV0HxGcJPyPVgin0j5R8KbVdq5oUghO8lbJrreO62eWTumI_k2kFzRUq95kzEIfABOQf8erW49V_GnEMDvFcXwq4xbgJ7tWVmsazFTGjt_SsJ4Yx8hhLPDpUuRSyOUFUrU3SGs1KVFII1d8iFAH_B7RVqBTLake7gEH4LTsuKP_jsu1BaIDn7SS3Vh87pcLqrEctuRy1ETMFtGSboJx0svdIKZPlwdMPnGQQIYTIF3wSp0NJfJwCBn12nFh57CIY_QkbZOHRl0/http%3A%2F%2Fellis.eu>
)
Head of department "Machine Learning" at the Austrian Society for Artificial Intelligence (ASAI)
LIT AI Lab & Institute for Machine Learning
Johannes Kepler University, Linz, Austria

https://www.jku.at/en/institute-for-machine-learning/about-us/team/assist-prof-mag-dr-guenter-klambauer

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