[Bioc-devel] HiCDCPlus related BiocFileCache entries needed to be deleted in build/check machines

[Kern, Lori]

I'm still not quite following then.   If there was not a new version and there was a new url than it should be a new entry in the cache.  How did you set up the cache as the implementation may be faulty then?


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Merve Sahin <merve.sahn using gmail.com>
Sent: Friday, May 20, 2022 3:18 PM
To: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] HiCDCPlus related BiocFileCache entries needed to be deleted in build/check machines

Thanks a lot Lori, I have made a change of download location in place for the same cache entry, so that might not be the case. Next time, I will make sure I version the cache entries as I do updates.

Have a great weekend!

Best,
Merve

On Wed, May 18, 2022, 22:37 Kern, Lori <Lori.Shepherd using roswellpark.org<mailto:Lori.Shepherd using roswellpark.org>> wrote:
Biocfilecache should automatically download the new version if available. I'm on vacation until Monday but want to investigate further why this is happening. I will check first thing when I return and make sure it is swiftly addressed early next week.

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From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Merve Sahin <merve.sahn using gmail.com<mailto:merve.sahn using gmail.com>>
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To: bioc-devel using r-project.org<mailto:bioc-devel using r-project.org> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
Subject: [Bioc-devel] HiCDCPlus related BiocFileCache entries needed to be deleted in build/check machines

Hello, I am the author and maintainer of the package HiCDCPlus, which has
been getting check errors on all platforms for a while now.

I had recently upgraded the necessary utility JAR (Juicer Tools) managed
with a BiocFileCache entry and looks like the machines are still using an
old version as a result of that caching, so could you please remove the
associated BiocFileCache folder for this package on the build machines?
This way, the correct version that doesn't error out on the check gets
downloaded.

I have already indicated in this package's  README file that such action is
recommended when reinstalling HiCDCPlus. Thank you so much in advance for
your help! ---Merve

The cache folder location can be obtained by running:

cache <- rappdirs::user_cache_dir(appname="HiCDCPlus")

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