[Bioc-devel] Question on package update and version bump

[Jennifer Wokaty]

Hi,

They will be updated when the builds finish today. (The report is updated but we still need to propagate the new windows and mac binaries.) Devel builders run everyday except Sunday and there's a new build report for release Monday, Wednesday, and Friday.

I updated R on the devel builders on Friday so some of them didn't complete Saturday's run to update the build report, which sometimes happens with a fresh install of R and may have added some confusion.

Jennifer Wokaty
they/them
Bioconductor Core Team
CUNY SPH

________________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Jiping Wang <jzwang using northwestern.edu>
Sent: Monday, June 6, 2022 7:46:14 AM
To: Anestis Gkanogiannis; bioc-devel using r-project.org
Subject: Re: [Bioc-devel] Question on package update and version bump

***ATTENTION: This email came from an external source. Do not open attachments or click on links from unknown senders or unexpected emails.***

Thanks. I noticed the source package of DegNorm has been updated to 1.7.1, but the windows and macosx version is still 1.7.0.

Also when will the changes be updated in the release version, which is currently 1.6.0?

From: Anestis Gkanogiannis <anestis using gkanogiannis.com>
Date: Monday, June 6, 2022 at 6:30 AM
To: Jiping Wang <jzwang using northwestern.edu>, bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: RE: [Bioc-devel] Question on package update and version bump
Hi,

I see DegNorm version 1.7.1 here https://urldefense.com/v3/__https://bioconductor.org/packages/devel/bioc/html/DegNorm.html__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvTnYY_Do$<https://urldefense.com/v3/__https:/bioconductor.org/packages/devel/bioc/html/DegNorm.html__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvTnYY_Do$>
and build report here https://urldefense.com/v3/__http://bioconductor.org/checkResults/devel/bioc-LATEST/DegNorm/__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvUjVapyY$<https://urldefense.com/v3/__http:/bioconductor.org/checkResults/devel/bioc-LATEST/DegNorm/__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvUjVapyY$>

Best regards,

Anestis Gkanogiannis, PhD
----------
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-----Original Message-----
From: Bioc-devel <bioc-devel-bounces using r-project.org> On Behalf Of Jiping Wang
Sent: 06 June 2022 13:21
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Question on package update and version bump

Hi,

  I am writing to inquire the process of package update and version bump. I submitted updated package DegNorm with a version bump to 1.7.1 last Thursday and wonder about the status of it. My understanding is that usually I should receive an email notice about the status of it. See the help information from https://urldefense.com/v3/__https://contributions.bioconductor.org/git-version-control.html__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvgo9AdBk$<https://urldefense.com/v3/__https:/contributions.bioconductor.org/git-version-control.html__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvgo9AdBk$>

But I didn�t receive email notices. When I went to the https://urldefense.com/v3/__https://github.com/Bioconductor/Contributions/issues/__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvydOjXeo$<https://urldefense.com/v3/__https:/github.com/Bioconductor/Contributions/issues/__;!!Dq0X2DkFhyF93HkjWTBQKhk!T5uT_ynlcPqd_mYaeaniCBm7xo_qKJc9_guu3MqRGGOOSXhoDa6DuBkr96a67Dth3V9n3M2j-qdnz9AhXcjvydOjXeo$>
I didn�t find my package listed there? Is there anything wrong? Or the procedures have been changed?

In addition, my understanding is that my push is to the development repository. When or how these changes will be made to the release version of the package?
Thanks for help.

Best,
Ji-Ping Wang



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