[Bioc-devel] PeacoQC Bioc version not in line with github repo

[Henrik Bengtsson]

> Indeed, although PeacoQC version on Bioc is higher (1.8) than in github
repo (1.7.3), the latest commits have not been included.

This is explained by Bioconductor bumping versions automatically when
there's a new release cycle. So, in this case it went from something like
1.7.2 to 1.8.0 on the Bioconductor side, while your contribution in 1.7.3
is still only in the GitHub side (because it was never pushed up to
Bioconductor).

/Henrik

On Thu, Dec 15, 2022, 04:19 Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> Besides reminding them to keep both in sync there is not much more the
> Bioc Devel can do.  It is up to the maintainers to properly maintain their
> packages and push to the appropriate places to make it available to the
> community.
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Philippe
> Hauchamps <philippehauchamps using hotmail.com>
> Sent: Thursday, December 15, 2022 4:09 AM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] PeacoQC Bioc version not in line with github repo
>
> Hi dear Bioc-devel community,
>
> I am developing a package, CytoPipeline, which depends a.o. on PeacoQC
> Bioc package. A few months ago, I contributed to PeacoQC with a PR, in
> order to solve an issue :
>
>
> https://secure-web.cisco.com/1kHaxHWvrkJ6pmvMy5l11CQpE8JgnouzBYno3I-i9g9wZ-q7AQ_bG1vGgaLMp-LdWnFUJjuNlZFQgO9JABK6ct50bePM4LthauLpL_xlbHzHAQH7cuy9RWzJ-lgUPnXBWkNCmWeDBxugF5OBSkJTUZFowlYTknhOhJxfEMyIiFUAukcq1jC8qBgdKD8P9tUZlu3ScUU-Mj9_4vH2cznII7rFPQhVqKlrqUsEG8uXKZz83XGxZZi51OkoL0FibgYpJKAoASPM0F2Odv0k5qvpjnRYISpGIwaRSEHrGVDKwEkNkeaZeYJGD43FHT96CPpmtGa0vDNFypb26tZPTZuLWzA/https%3A%2F%2Fgithub.com%2Fsaeyslab%2FPeacoQC%2Fpull%2F9
>
>
> https://secure-web.cisco.com/18j7J58SAasdW-RIw2_2x4Ap2qzc4hVoqLUkTzo1Z6tU0s2Bo1wokU4CGAIxAT5Ab2aqkUMHg2JzA4cUPORI4y5ZVgxJ3S5s_l6Y9GwtAcXp3Vo9WckqO41lnnsjzFvo9CBoj1yweLFfiZavDovFlwZt4UBlmXHPwRvs176H3Y8Kte87L-psj5Gtf1sVJUatcGs6OaD3AjsgRG5KYeH-H00ceCHAbO86U6MTobby02TO7eYSX_ZOwPjgZZHbTsVGKAWEbdt3PqmlSURhtKzNrsNwcknPunJZyyQEtf2wRHXEuMA_GincdXB-KypjzcKZDw4SB44B3ybSExbSYEYyNtQ/https%3A%2F%2Fgithub.com%2Fsaeyslab%2FPeacoQC%2Fissues%2F8
>
>
> My PR was subsequently validated by the package maintainer and integrated
> into the code base (June 2022).
>
> However, I recently noticed that the latest changes made on the PeacoQC
> github repo, have not been ported to the BioC git repository.  Indeed,
> although PeacoQC version on Bioc is higher (1.8) than in github repo
> (1.7.3), the latest commits have not been included.
>
> I already posted a message linked to the PeacoQC github issue, to request
> an update of the Bioc repo.
> However, is there possibly some action that could be done from Bioc Devel
> side to gently push for this update ?
>
> Thanks,
>
> Philippe
>
>
>
>
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