[Bioc-devel] PeacoQC Bioc version not in line with github repo

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Dec 15 13:19:08 CET 2022

Besides reminding them to keep both in sync there is not much more the Bioc Devel can do.  It is up to the maintainers to properly maintain their packages and push to the appropriate places to make it available to the community.

Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Philippe Hauchamps <philippehauchamps using hotmail.com>
Sent: Thursday, December 15, 2022 4:09 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] PeacoQC Bioc version not in line with github repo

Hi dear Bioc-devel community,

I am developing a package, CytoPipeline, which depends a.o. on PeacoQC Bioc package. A few months ago, I contributed to PeacoQC with a PR, in order to solve an issue :



My PR was subsequently validated by the package maintainer and integrated into the code base (June 2022).

However, I recently noticed that the latest changes made on the PeacoQC github repo, have not been ported to the BioC git repository.  Indeed, although PeacoQC version on Bioc is higher (1.8) than in github repo (1.7.3), the latest commits have not been included.

I already posted a message linked to the PeacoQC github issue, to request an update of the Bioc repo.
However, is there possibly some action that could be done from Bioc Devel side to gently push for this update ?



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