[Bioc-devel] Nightly builds for Gemma.R

[Kern, Lori]

javiercastilloar with GitCredentials email javiercastilloar using gmail.com
and
yavyx with GitCredentials email paul using msl.ubc.ca
have access.

Please let us know if we can remove access for either or both of these accounts.


Currently you do not have access in the GitCredentials account.  We would have to create an account for ogan.mancarci using gmail.com.  Since you are the listed maintainer and all the git commits of the package come from your email, I feel like we can proceed with an account creation. Please let us know if there is also a github id that we can associate with your account.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Burak Ogan Mancarci <ogan.mancarcii using gmail.com>
Sent: Tuesday, August 16, 2022 7:24 PM
To: Peter Hickey <peter.hickey using gmail.com>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Nightly builds for Gemma.R

Ah thank you, I can see it now. Was also wondering if we could clarify who
the official maintainer of the package is now. The original submitter
was Javier Castillo-Arnemann and we were using his account for key
management during the submission process. I was planning to contact him to
change the maintainer as explained here
<https://secure-web.cisco.com/1eOAJGwPZZX6G2rq_Hw9tOsKdUAUyHxotrqIhdOuSSBlTWbbNiUC3ZjO9qad2n49ppQwtby39qs2ep2nGnECCy22fpvhrdvnCP2hvF58tGwVOCx7fAAxATp7_UWddGe3gdunHhH10Vf0r4ZYpqrw2wZEQnJwVuhX8TUAK3Z2V7bLU5dm_di-QGQPg_SdCPL0DiZ20aXReY4d-6RQwLISDXumU5ibP6XfukWMv34I5ml2e9Up2UKOj0y8Nf9icHFU-g9GD4eorh-I1RQ2qX37Rv5SFUonI9VN6a-dS4e6yAh1o9cI8nr6rrN_-aFLT4H5n/https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23change-maintainer>
but looking at the package now, I appear to be the maintainer (under
ogan.mancarci using gmail.com) so not sure if this is necessary. However trying
to activate a BiocCredentials account with my email returns the error:

"ogan.mancarci using gmail.com is not associated with a maintainer of a
Bioconductor package. Please check the spelling or contact
bioc-devel using r-project.org for help."

Should I still go back to him or is it possible to handle it on our end?

On Tue, 16 Aug 2022 at 16:00, Peter Hickey <peter.hickey using gmail.com> wrote:

> It can take a few days for an accepted package to appear on the
> biocondutor.org webpage and be available via `BiocManager::install()`
> but it looks like https://secure-web.cisco.com/1gbjNfkXJCjcItjJzyjueUnIMQWa8CpaN4xm57FvZEbIBPS7i6SH9UfHoruT2YSOdq0mNiAe8qrRGzBoApzCd8a0ArSoiPSEBxJabDduzJUcRyMrZ9ljjzK2ylbMfWla6Meg2o97VmzXvESJfLkodeq-ef97m3j1zTRu7xeNeooes9Z9QmJkJDTiboM-8CgQp9zWynV6Dy8nAlYdk08FhJyqerFR9jr3T5WFT_wYt5_qftoJRZvNVwZJGFduCb4jn23c-nHA5Tceo4VguOPsxsfU8may0jvbtmaiuT0rbutqdrfllKYUJ5qL8T3I-qCYL/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fgemma.R now
> re-directs to
> https://secure-web.cisco.com/17CFO6QSHiMCog668yOdN_t3QW-ANVnGKUNo6izDiOENBxe_55Lggqi5rBi6ccizEW6W_vK4hMY6pCZ5Q_jTEO72HbIkiJXRTD-RNXwsc2XyMKUZvq1g_BLzpdoOO_pRMsGd2wO_y9EQeXmXgGzZOe6PHgcRBNc7qJfdMm-hu0udh57OD5vlL1ZzaLmiWAN60juG8YSsnqlgllhprTJsh2kQwbdZ4KkFfmXCDruQnu7kUj83BqrvurPstLr_IMNjeaH9YmxXMGxwJVcV1D5QxWJ5GYPVMwb7a407I-Ba_OaWgiedfhXZIUyUdViQc9a4o/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fdata%2Fexperiment%2Fhtml%2Fgemma.R.html
>
> On Wed, 17 Aug 2022 at 06:55, Burak Ogan Mancarci
> <ogan.mancarcii using gmail.com> wrote:
> >
> > Hi,
> >
> > I have been maintaining the Gemma.R package which was recently accepted
> to
> > bioconductor. As per this
> > <
> https://secure-web.cisco.com/185za4dzEJkftHBZooackiuJc_ehi2vuIh7ompXMJyTqO4tbLRAQ0DM95S_lsHn6_aYH5rXWnVbYFeyg5EvfUTC2DOmEqr_PhMIYq6jv0SYQjU8aPTzoeLtP5jvwQo61-HcIOBj6USrhOBjp9DW3mNulDL1cTR3ROwGSiHwPhb-jk7gSkzy48Bj2Oy8os0pSVFWms7b8YY2COOSj--byCtwDadasgRRwEWeLO6uWmKRgaT9TXLsXcOID3C0OtDaPsq5OKuUXtc1krDup8nRNGFCc45A9HwKWmhxxyYPJ7dyHrKvTXoJviHrRucOoArL64/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F2533%23issuecomment-1213216519
> >
> > comment,
> > it was supposed to be accessible at
> > https://secure-web.cisco.com/1gbjNfkXJCjcItjJzyjueUnIMQWa8CpaN4xm57FvZEbIBPS7i6SH9UfHoruT2YSOdq0mNiAe8qrRGzBoApzCd8a0ArSoiPSEBxJabDduzJUcRyMrZ9ljjzK2ylbMfWla6Meg2o97VmzXvESJfLkodeq-ef97m3j1zTRu7xeNeooes9Z9QmJkJDTiboM-8CgQp9zWynV6Dy8nAlYdk08FhJyqerFR9jr3T5WFT_wYt5_qftoJRZvNVwZJGFduCb4jn23c-nHA5Tceo4VguOPsxsfU8may0jvbtmaiuT0rbutqdrfllKYUJ5qL8T3I-qCYL/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fgemma.R but it currently redirects to
> > https://secure-web.cisco.com/1SYFYnKUAKWFq1EPqz34ulKWKeZo9Wbd0oFe9aI2QNni6-b6wS06cmI3WmDKf7u7LsD_oLv__ZyyytTeY4MzsrFlT6bEHJmNGATQ1kTXS3Pca1CLax4lEZNeKpIGUdpCcMzvatbJCja8hPzSYdYdghqSXEYYsCG9-qb94vEyMf_b0WpGy6kPHSMXbPTfo5017f_5yCdC-Tdt-k8wfCEHIUuhHXS3fa-ATuqDifnHlg3JworEMX8oLwHK75Qyl7g2ybv7HHlxrAhqOce-Fbuk7XaZHTdkvzemaU4rdQIAaix7TeZRx6zIYpcPuQnBIhNvm/https%3A%2F%2Fbioconductor.org%2Fabout%2Fremoved-packages%2F I was wondering if
> there
> > was a problem with the submission. If this is because of a failed test, I
> > am unable to see the test results to fix the issue.
> >
> > Cheers,
> > Ogan
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> > https://secure-web.cisco.com/1bpMcEsDg8rzr3Lr6_jdtV7mAH5sRAIhlFv5KNc4NwIdxJZ3FbflteGNJGWW7w9HOR0rrfQhXh-PX-OQdH_-OWvtvz0zVsQqG4RIHm0tn3EHhawq5WfeiJxQFNFgMuB0f1PVgor7B_Vgf6khmUBCFB_8Jqb-0XtWRv9Stp4KhnxZN3YxX-yFKD3EJFoinKdLY6GhlRWmrNPcaltxcKlDJxwLfNY_hf5Tk6fgHBzRJahII36ybPkLd64ttEQo1h4IOsqsSBOIbARj5JpjP-N6qc5CnmpQL4I4R7N-r5hoZX7Trw083CJVs-dbQYMLnBqC9/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>

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