[Bioc-devel] Nightly builds for Gemma.R

[Burak Ogan Mancarci]

Ideally we would have Paul Pavlidis as the maintainer (email:
paul using msl.ubc.ca, github:https://github.com/ppavlidis) who is the principal
investigator of the lab but we don't have the password for the account
(listed under yavyx, our previous developer in the mail above) that is
associated to his email. An attempt on Paul's end to reset it seems to have
failed.

On Wed, 17 Aug 2022 at 04:32, Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> javiercastilloar with GitCredentials email javiercastilloar using gmail.com
> and
> yavyx with GitCredentials email paul using msl.ubc.ca
> have access.
>
> Please let us know if we can remove access for either or both of these
> accounts.
>
>
> Currently you do not have access in the GitCredentials account.  We would
> have to create an account for ogan.mancarci using gmail.com.  Since you are the
> listed maintainer and all the git commits of the package come from your
> email, I feel like we can proceed with an account creation. Please let us
> know if there is also a github id that we can associate with your account.
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Burak
> Ogan Mancarci <ogan.mancarcii using gmail.com>
> *Sent:* Tuesday, August 16, 2022 7:24 PM
> *To:* Peter Hickey <peter.hickey using gmail.com>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] Nightly builds for Gemma.R
>
> Ah thank you, I can see it now. Was also wondering if we could clarify who
> the official maintainer of the package is now. The original submitter
> was Javier Castillo-Arnemann and we were using his account for key
> management during the submission process. I was planning to contact him to
> change the maintainer as explained here
> <
> https://secure-web.cisco.com/1eOAJGwPZZX6G2rq_Hw9tOsKdUAUyHxotrqIhdOuSSBlTWbbNiUC3ZjO9qad2n49ppQwtby39qs2ep2nGnECCy22fpvhrdvnCP2hvF58tGwVOCx7fAAxATp7_UWddGe3gdunHhH10Vf0r4ZYpqrw2wZEQnJwVuhX8TUAK3Z2V7bLU5dm_di-QGQPg_SdCPL0DiZ20aXReY4d-6RQwLISDXumU5ibP6XfukWMv34I5ml2e9Up2UKOj0y8Nf9icHFU-g9GD4eorh-I1RQ2qX37Rv5SFUonI9VN6a-dS4e6yAh1o9cI8nr6rrN_-aFLT4H5n/https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23change-maintainer
> >
> but looking at the package now, I appear to be the maintainer (under
> ogan.mancarci using gmail.com) so not sure if this is necessary. However trying
> to activate a BiocCredentials account with my email returns the error:
>
> "ogan.mancarci using gmail.com is not associated with a maintainer of a
> Bioconductor package. Please check the spelling or contact
> bioc-devel using r-project.org for help."
>
> Should I still go back to him or is it possible to handle it on our end?
>
> On Tue, 16 Aug 2022 at 16:00, Peter Hickey <peter.hickey using gmail.com> wrote:
>
> > It can take a few days for an accepted package to appear on the
> > biocondutor.org webpage and be available via `BiocManager::install()`
> > but it looks like
> https://secure-web.cisco.com/1gbjNfkXJCjcItjJzyjueUnIMQWa8CpaN4xm57FvZEbIBPS7i6SH9UfHoruT2YSOdq0mNiAe8qrRGzBoApzCd8a0ArSoiPSEBxJabDduzJUcRyMrZ9ljjzK2ylbMfWla6Meg2o97VmzXvESJfLkodeq-ef97m3j1zTRu7xeNeooes9Z9QmJkJDTiboM-8CgQp9zWynV6Dy8nAlYdk08FhJyqerFR9jr3T5WFT_wYt5_qftoJRZvNVwZJGFduCb4jn23c-nHA5Tceo4VguOPsxsfU8may0jvbtmaiuT0rbutqdrfllKYUJ5qL8T3I-qCYL/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fgemma.R
> now
> > re-directs to
> >
> https://secure-web.cisco.com/17CFO6QSHiMCog668yOdN_t3QW-ANVnGKUNo6izDiOENBxe_55Lggqi5rBi6ccizEW6W_vK4hMY6pCZ5Q_jTEO72HbIkiJXRTD-RNXwsc2XyMKUZvq1g_BLzpdoOO_pRMsGd2wO_y9EQeXmXgGzZOe6PHgcRBNc7qJfdMm-hu0udh57OD5vlL1ZzaLmiWAN60juG8YSsnqlgllhprTJsh2kQwbdZ4KkFfmXCDruQnu7kUj83BqrvurPstLr_IMNjeaH9YmxXMGxwJVcV1D5QxWJ5GYPVMwb7a407I-Ba_OaWgiedfhXZIUyUdViQc9a4o/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fdata%2Fexperiment%2Fhtml%2Fgemma.R.html
> >
> > On Wed, 17 Aug 2022 at 06:55, Burak Ogan Mancarci
> > <ogan.mancarcii using gmail.com> wrote:
> > >
> > > Hi,
> > >
> > > I have been maintaining the Gemma.R package which was recently accepted
> > to
> > > bioconductor. As per this
> > > <
> >
> https://secure-web.cisco.com/185za4dzEJkftHBZooackiuJc_ehi2vuIh7ompXMJyTqO4tbLRAQ0DM95S_lsHn6_aYH5rXWnVbYFeyg5EvfUTC2DOmEqr_PhMIYq6jv0SYQjU8aPTzoeLtP5jvwQo61-HcIOBj6USrhOBjp9DW3mNulDL1cTR3ROwGSiHwPhb-jk7gSkzy48Bj2Oy8os0pSVFWms7b8YY2COOSj--byCtwDadasgRRwEWeLO6uWmKRgaT9TXLsXcOID3C0OtDaPsq5OKuUXtc1krDup8nRNGFCc45A9HwKWmhxxyYPJ7dyHrKvTXoJviHrRucOoArL64/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F2533%23issuecomment-1213216519
> > >
> > > comment,
> > > it was supposed to be accessible at
> > >
> https://secure-web.cisco.com/1gbjNfkXJCjcItjJzyjueUnIMQWa8CpaN4xm57FvZEbIBPS7i6SH9UfHoruT2YSOdq0mNiAe8qrRGzBoApzCd8a0ArSoiPSEBxJabDduzJUcRyMrZ9ljjzK2ylbMfWla6Meg2o97VmzXvESJfLkodeq-ef97m3j1zTRu7xeNeooes9Z9QmJkJDTiboM-8CgQp9zWynV6Dy8nAlYdk08FhJyqerFR9jr3T5WFT_wYt5_qftoJRZvNVwZJGFduCb4jn23c-nHA5Tceo4VguOPsxsfU8may0jvbtmaiuT0rbutqdrfllKYUJ5qL8T3I-qCYL/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fgemma.R
> but it currently redirects to
> > >
> https://secure-web.cisco.com/1SYFYnKUAKWFq1EPqz34ulKWKeZo9Wbd0oFe9aI2QNni6-b6wS06cmI3WmDKf7u7LsD_oLv__ZyyytTeY4MzsrFlT6bEHJmNGATQ1kTXS3Pca1CLax4lEZNeKpIGUdpCcMzvatbJCja8hPzSYdYdghqSXEYYsCG9-qb94vEyMf_b0WpGy6kPHSMXbPTfo5017f_5yCdC-Tdt-k8wfCEHIUuhHXS3fa-ATuqDifnHlg3JworEMX8oLwHK75Qyl7g2ybv7HHlxrAhqOce-Fbuk7XaZHTdkvzemaU4rdQIAaix7TeZRx6zIYpcPuQnBIhNvm/https%3A%2F%2Fbioconductor.org%2Fabout%2Fremoved-packages%2F
> I was wondering if
> > there
> > > was a problem with the submission. If this is because of a failed
> test, I
> > > am unable to see the test results to fix the issue.
> > >
> > > Cheers,
> > > Ogan
> > >
> > >         [[alternative HTML version deleted]]
> > >
> > > _______________________________________________
> > > Bioc-devel using r-project.org mailing list
> > >
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>
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